Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq5557 120 3e-22 >seq5557 Length=425908 Score = 120 bits (132), Expect = 3e-22 Identities = 169/230 (73%), Gaps = 12/230 (5%) Strand=Plus/Plus Query 99544 CGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCA-GGCCTC--CAGG 99600 ||||| || || | |||||||||||||||||||||||| |||||| ||| || |||| Sbjct 171417 CGCACCGTCAGGCACGTGTTGAGCAGCAGCACGCCGCGGTCCGCCCACGGCGTCAGCAGG 171476 Query 99601 CA-GCCGTGCTGCGGCCGCGGGGTCCCGG---GGAAGTTCTTCTGCACGGCCGCGTAGAT 99656 | ||| || || ||| |||| || || || ||| || || ||| ||| || Sbjct 171477 CCCGCCTTGTTG-GGCGGCGGCGTGAAGGTCGGGTAGTCGCGCTTCAGGGCTATGTACAT 171535 Query 99657 GTTCTGGAGGCTGGGCGGGATCGGAACGCCGCGGTTC--ACGCTGAAGGCCAGGCCGTGG 99714 ||||| |||| || || ||| || || || | ||| |||||| ||||||||| Sbjct 171536 GTTCTTGAGGGACGGGGGCGCCGG--CGTCGGGGCCCGGACGGAGAAGGCGAGGCCGTGG 171593 Query 99715 GCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 ||||| | | ||||||||||||||||||| ||||||||||||||||| Sbjct 171594 GCCTGGTTGATGTTGTGGTAGGGGTCCTGGCCGAGGATGACGACCTTGAC 171643 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 99699 GAAGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGAC 99758 |||||| |||||||||||||| | | ||||||||||||||||||| ||||||||||| Sbjct 171780 GAAGGCGAGGCCGTGGGCCTGGTTGACGTTGTGGTAGGGGTCCTGGCCGAGGATGACGAC 171839 Query 99759 CTTGAC 99764 |||||| Sbjct 171840 CTTGAC 171845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440687667586320