Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq3335 118 9e-22 seq29860 93.3 4e-14 >seq3335 Length=453419 Score = 118 bits (130), Expect = 9e-22 Identities = 180/254 (71%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||| ||||| ||||| ||||| | | | || || || | | ||||| Sbjct 234356 ACGCCAGTGCTTCCGAAGCCGCCAGCGCCGCGGACGCTCTCCTCGAGCTCCTCTACCTCG 234297 Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 |||| ||||| | | || ||||||| ||||||||| || | || || ||| Sbjct 234296 ACCACTTCGGG-AGTGTAGATGCGCTCGATGATCAGCTGGGCGACGCGATCACCCTCAGC 234238 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 ||| | || ||| ||| | || ||||||||||| | || | |||||||||||| Sbjct 234237 CACCGCAAAGTCGGTGTCGGCGTGGTTGAACAGCAGGATCTTGACCTGGCCGCGGTAGTC 234178 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 ||| || || ||||| |||||| |||||||||||||||| || ||||| |||||||| Sbjct 234177 GGCATCAATGACGCCAGCGCCCGTGTCGATGAAGTGCTTGGAGGCGAGGCCAGAGCGGGG 234118 Query 5740 AGCCACGCGGCCGT 5753 || | |||||||| Sbjct 234117 GGCGATGCGGCCGT 234104 Score = 105 bits (116), Expect = 6e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 5581 GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCC 5640 |||||| ||||||||| || | ||||| ||| ||| | || ||| ||| | | Sbjct 249354 GCGCTCAATGATCAGCTGGGCGACGCGGTCACCCTCGGCCACCGCAAAGTCGGTGTCGGC 249295 Query 5641 GAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCC 5700 | ||||||||| | | || | ||||||||||||||| || || ||||| ||||| Sbjct 249294 GTGGTTGAACAGAAGGATCTTGACCTGGCCGCGGTAGTCGGCATCAATGACGCCAGCGCC 249235 Query 5701 CACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGT 5753 | |||||||||||||||| || ||||| |||||||| || | |||||||| Sbjct 249234 CGTGTCGATGAAGTGCTTGGAGGCGAGGCCAGAGCGGGGGGCGATGCGGCCGT 249182 >seq29860 Length=102 Score = 93.3 bits (102), Expect = 4e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 5668 GCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAG 5727 ||||||||||||||| || || ||||| |||||| |||||||||||||||| || || Sbjct 15 GCCGCGGTAGTCGGCATCAATGACGCCAGCGCCCGTGTCGATGAAGTGCTTGGAGGCGAG 74 Query 5728 GCCGGAGCGGGGAGCCACGCGGCCGT 5753 ||| |||||||| || | |||||||| Sbjct 75 GCCAGAGCGGGGGGCGATGCGGCCGT 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429853228883984