Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq3335 118 9e-22
seq29860 93.3 4e-14
>seq3335
Length=453419
Score = 118 bits (130), Expect = 9e-22
Identities = 180/254 (71%), Gaps = 2/254 (1%)
Strand=Plus/Minus
Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560
||||| ||| ||||| ||||| ||||| | | | || || || | | |||||
Sbjct 234356 ACGCCAGTGCTTCCGAAGCCGCCAGCGCCGCGGACGCTCTCCTCGAGCTCCTCTACCTCG 234297
Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619
|||| ||||| | | || ||||||| ||||||||| || | || || |||
Sbjct 234296 ACCACTTCGGG-AGTGTAGATGCGCTCGATGATCAGCTGGGCGACGCGATCACCCTCAGC 234238
Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679
||| | || ||| ||| | || ||||||||||| | || | ||||||||||||
Sbjct 234237 CACCGCAAAGTCGGTGTCGGCGTGGTTGAACAGCAGGATCTTGACCTGGCCGCGGTAGTC 234178
Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739
||| || || ||||| |||||| |||||||||||||||| || ||||| ||||||||
Sbjct 234177 GGCATCAATGACGCCAGCGCCCGTGTCGATGAAGTGCTTGGAGGCGAGGCCAGAGCGGGG 234118
Query 5740 AGCCACGCGGCCGT 5753
|| | ||||||||
Sbjct 234117 GGCGATGCGGCCGT 234104
Score = 105 bits (116), Expect = 6e-18
Identities = 127/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 5581 GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCC 5640
|||||| ||||||||| || | ||||| ||| ||| | || ||| ||| | |
Sbjct 249354 GCGCTCAATGATCAGCTGGGCGACGCGGTCACCCTCGGCCACCGCAAAGTCGGTGTCGGC 249295
Query 5641 GAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCC 5700
| ||||||||| | | || | ||||||||||||||| || || ||||| |||||
Sbjct 249294 GTGGTTGAACAGAAGGATCTTGACCTGGCCGCGGTAGTCGGCATCAATGACGCCAGCGCC 249235
Query 5701 CACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGT 5753
| |||||||||||||||| || ||||| |||||||| || | ||||||||
Sbjct 249234 CGTGTCGATGAAGTGCTTGGAGGCGAGGCCAGAGCGGGGGGCGATGCGGCCGT 249182
>seq29860
Length=102
Score = 93.3 bits (102), Expect = 4e-14
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 5668 GCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAG 5727
||||||||||||||| || || ||||| |||||| |||||||||||||||| || ||
Sbjct 15 GCCGCGGTAGTCGGCATCAATGACGCCAGCGCCCGTGTCGATGAAGTGCTTGGAGGCGAG 74
Query 5728 GCCGGAGCGGGGAGCCACGCGGCCGT 5753
||| |||||||| || | ||||||||
Sbjct 75 GCCAGAGCGGGGGGCGATGCGGCCGT 100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429853228883984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |