Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq8335 100 2e-16
seq20113 86.0 5e-12
>seq8335
Length=118861
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| ||| |||||| ||||||||||| || | ||| || | ||||| ||||||
Sbjct 14709 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTCAAGCTGC 14650
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| || || | || | |||||| || || || | || ||||||||| ||| |||
Sbjct 14649 TTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTC 14590
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||||| | ||||| |||| ||||||| ||| | || ||||| || |||||
Sbjct 14589 GACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGTC 14530
Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726
|| || || ||||| ||||||||
Sbjct 14529 AGCGTCTTGACAAAGATCTGCAT 14507
>seq20113
Length=64481
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| || |||||| ||||||||||| || | || || | ||||| ||||||
Sbjct 11158 TGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGC 11099
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| || | | || | ||||| || || || | || ||||||||| ||| ||
Sbjct 11098 TTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTG 11039
Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
||||| | | || ||||| |||| |||||| ||||| || ||||| || ||||
Sbjct 11038 GACTTGACGTTGTCG--ATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGG 10981
Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726
| ||||| || ||||| ||||||||
Sbjct 10980 TCAGAGTCTTGACAAAGATCTGCAT 10956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421054146850382
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |