Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_006151.1 Length=143461 Score E Sequences producing significant alignments: (Bits) Value seq5557 98.7 9e-16 >seq5557 Length=425908 Score = 98.7 bits (108), Expect = 9e-16 Identities = 168/234 (72%), Gaps = 11/234 (5%) Strand=Plus/Plus Query 94192 GCGC-CGCACGGTCAGCGTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCA-GGCCTC- 94248 |||| ||||| ||||| |||||| ||||||||||| |||||| |||||| ||| || Sbjct 171412 GCGCGCGCACCGTCAGGCACGTGTTGAGCAGCAGCACGCCGCGGTCCGCCCACGGCGTCA 171471 Query 94249 -CAGGCA-GCCGTG---GGCGGGCGCGGGCAGCGTCGGGTACGTCGCCCGG-ACCGCCGC 94302 ||||| ||| || ||||| ||| | || |||||||| ||||| | | || Sbjct 171472 GCAGGCCCGCCTTGTTGGGCGGCGGCGTGAAG-GTCGGGTA-GTCGCGCTTCAGGGCTAT 171529 Query 94303 GAAGATGTTGGCCAGGCTCGGGGGGATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCC 94362 | | ||||| ||| |||||| |||| | | ||||||| |||||| || || Sbjct 171530 GTACATGTTCTTGAGGGACGGGGGCGCCGGCGTCGGGGCCCGGACGGAGAAGGCGAGGCC 171589 Query 94363 GTGGGCCTGGCCCGGCCCGTGGTACGGGTCCTGGCCGATGATGACCACCTTGAC 94416 |||||||||| |||||| ||||||||||||| |||||| |||||||| Sbjct 171590 GTGGGCCTGGTTGATGTTGTGGTAGGGGTCCTGGCCGAGGATGACGACCTTGAC 171643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458727008607120