Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq32829 114 2e-21
seq27224 114 2e-21
seq32496 105 1e-18
seq10779 105 1e-18
>seq32829
Length=285975
Score = 114 bits (126), Expect = 2e-21
Identities = 88/102 (86%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| ||||
Sbjct 263409 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 263467
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||||||||| |||||||||||||| ||||||||| | ||||
Sbjct 263468 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 263509
>seq27224
Length=45936
Score = 114 bits (126), Expect = 2e-21
Identities = 88/102 (86%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| ||||
Sbjct 32163 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 32221
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||||||||| |||||||||||||| ||||||||| | ||||
Sbjct 32222 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 32263
Score = 82.4 bits (90), Expect = 1e-11
Identities = 116/163 (71%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| || | |||| ||||| ||||||| || || || | ||| |
Sbjct 32321 TGATCTACGAGGAGACCCGCGGTGTTCTGAAGTCCTTCCTCGAGGGTGTCATTCGTGACG 32380
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || || || ||||| || || || ||||||||||| ||| | || | ||||| |
Sbjct 32381 CCGTCACGTACACGGAGCATGCCAAGCGCAAGACTGTCACGTCCCTTGACGTGGTCTACG 32440
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
| ||||| || || ||||||| |||| ||||| || ||||
Sbjct 32441 CTTTGAAGCGCCAGGGCCGTACTCTTTACGGTTTCGGTGGTTA 32483
>seq32496
Length=293328
Score = 105 bits (116), Expect = 1e-18
Identities = 86/102 (84%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| ||||
Sbjct 98183 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 98125
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||||||||| || |||||||| || ||||||||| | ||||
Sbjct 98124 TCCGTCGTCTCGCGCGTCGTGGCGGTGTCAAGCGTATTTCTG 98083
>seq10779
Length=105940
Score = 105 bits (116), Expect = 1e-18
Identities = 86/102 (84%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| ||||
Sbjct 102552 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGCATCACCAAGCCCGCTA 102610
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||||||||| || |||||||| || ||||||||| | ||||
Sbjct 102611 TCCGTCGTCTCGCGCGTCGTGGCGGTGTCAAGCGTATTTCTG 102652
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79040107068726
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |