Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq32829 114 2e-21 seq27224 114 2e-21 seq32496 105 1e-18 seq10779 105 1e-18 >seq32829 Length=285975 Score = 114 bits (126), Expect = 2e-21 Identities = 88/102 (86%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| |||| Sbjct 263409 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 263467 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||||||||| |||||||||||||| ||||||||| | |||| Sbjct 263468 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 263509 >seq27224 Length=45936 Score = 114 bits (126), Expect = 2e-21 Identities = 88/102 (86%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| |||| Sbjct 32163 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 32221 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||||||||| |||||||||||||| ||||||||| | |||| Sbjct 32222 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 32263 Score = 82.4 bits (90), Expect = 1e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | |||| ||||| ||||||| || || || | ||| | Sbjct 32321 TGATCTACGAGGAGACCCGCGGTGTTCTGAAGTCCTTCCTCGAGGGTGTCATTCGTGACG 32380 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || || || ||||| || || || ||||||||||| ||| | || | ||||| | Sbjct 32381 CCGTCACGTACACGGAGCATGCCAAGCGCAAGACTGTCACGTCCCTTGACGTGGTCTACG 32440 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 | ||||| || || ||||||| |||| ||||| || |||| Sbjct 32441 CTTTGAAGCGCCAGGGCCGTACTCTTTACGGTTTCGGTGGTTA 32483 >seq32496 Length=293328 Score = 105 bits (116), Expect = 1e-18 Identities = 86/102 (84%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| |||| Sbjct 98183 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 98125 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||||||||| || |||||||| || ||||||||| | |||| Sbjct 98124 TCCGTCGTCTCGCGCGTCGTGGCGGTGTCAAGCGTATTTCTG 98083 >seq10779 Length=105940 Score = 105 bits (116), Expect = 1e-18 Identities = 86/102 (84%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| |||| Sbjct 102552 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGCATCACCAAGCCCGCTA 102610 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||||||||| || |||||||| || ||||||||| | |||| Sbjct 102611 TCCGTCGTCTCGCGCGTCGTGGCGGTGTCAAGCGTATTTCTG 102652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79040107068726