Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq336 143 3e-29 seq31830 138 1e-27 seq7069 93.3 5e-14 seq4446 82.4 1e-10 >seq336 Length=177044 Score = 143 bits (158), Expect = 3e-29 Identities = 456/702 (65%), Gaps = 20/702 (3%) Strand=Plus/Minus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| || || | || ||||| | | ||| || |||| | || || || ||||| Sbjct 110837 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 110778 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 |||||||| || ||||| | || | || ||||| | | | | ||||| || || Sbjct 110777 AAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCG 110718 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| || || |||||| | | | ||||| ||||| || || | ||| ||| Sbjct 110717 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 110658 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | | || || || ||||| || ||||| || | ||| | || ||||| || | Sbjct 110657 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 110598 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | | ||| || | || |||||||| | || ||||| |||| || || ||| Sbjct 110597 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCA 110538 Query 63468 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63527 ||||||| || | | ||||| || || || ||||| || ||||| | || Sbjct 110537 GTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCA 110478 Query 63528 CATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63587 || || | ||||| |||||||| || ||||||||||| |||||| | || || Sbjct 110477 CAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTATCATCCTTCATGTCGACCAGGAAG 110418 Query 63588 CAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63643 ||| |||| | ||| | || || || || || || | ||||||||| ||||| Sbjct 110417 CAGGACGACA---GCTGA-GCCTGGGGCGTGCCAGCGTTGAAGAGGGTAGGAGAGGCGTG 110362 Query 63644 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATC 63697 || || |||| | || | || |||||||||||||| ||| | || | | || Sbjct 110361 TGTGAAGAATTTGTTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT-TGTCTC 110303 Query 63698 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63757 || || || || | |||||||| | ||||||||| || | || ||||||| Sbjct 110302 CC-----CAGATACCAACGGACACACGCATAATCATGTGCTGCGGGCGCTCGGCGATCTT 110248 Query 63758 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63817 | || | || | | || || |||| ||| || || ||||| || | ||| Sbjct 110247 GCCGTCAAGCTTGAGGAGATAAGAGCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTAGTT 110188 Query 63818 AAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 ||||| || ||||| | ||| | |||| ||| | ||||| Sbjct 110187 GAAGTCACGATCGTAGACAATGGCAGAGTCGAGCTCCTCCTT 110146 >seq31830 Length=311768 Score = 138 bits (152), Expect = 1e-27 Identities = 451/698 (65%), Gaps = 12/698 (2%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| || || | || ||||| | | ||| || |||| | || || || ||||| Sbjct 111173 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 111232 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 |||||||| || ||||| | || | || ||||| | | | | ||||| || || Sbjct 111233 AAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCG 111292 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| || || |||||| | | | ||||| ||||| || || | ||| ||| Sbjct 111293 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 111352 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | | || || || ||||| || ||||| || | ||| | || ||||| || | Sbjct 111353 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 111412 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | | ||| || | || |||||||| | || ||||| |||| || || ||| Sbjct 111413 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCA 111472 Query 63468 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63527 ||||||| || | | ||||| || || || ||||| || ||||| | || Sbjct 111473 GTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCA 111532 Query 63528 CATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63587 || || | ||||| |||||||| || ||||| ||||| |||||| || || || Sbjct 111533 CAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAG 111592 Query 63588 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63647 ||| |||| || || || || || || || | ||||||||| ||||| || Sbjct 111593 CAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGTGTG 111652 Query 63648 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATCCCAT 63701 || |||| || | || |||||||||||||| ||| | || | | |||| Sbjct 111653 AAGAATTTGCTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT-TGTCTCCC-- 111709 Query 63702 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 63761 || || || | |||||||| | ||||||||| || | || | |||||| | Sbjct 111710 ---CAGATACCGACGGAAACACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTGCCG 111766 Query 63762 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63821 | | || | | ||||| |||| || || || ||||| || | ||| ||| Sbjct 111767 TCAAGCTTGAGGAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAG 111826 Query 63822 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 || || ||||| | ||| |||||| || | ||||| Sbjct 111827 TCACGGTCGTAGACAATGGCCGAGTCAAGCTCCTCCTT 111864 >seq7069 Length=10009 Score = 93.3 bits (102), Expect = 5e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || ||| |||||||| ||| ||||||||||| | | || || |||||||| Sbjct 237 AACAGCAGACAAGCGAAATCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 178 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || || ||||| ||||| ||||| || ||||| || || || ||||| | ||| Sbjct 177 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATTGAGGCGAAGGCACCA 118 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33448 |||||||| || || || | || || |||| Sbjct 117 CTGAAGAAGATACCCTCAACGACCGCGAAAGCAA 84 >seq4446 Length=444291 Score = 82.4 bits (90), Expect = 1e-10 Identities = 174/259 (67%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || || ||||| || || ||||| || |||||||| |||| |||||| | || | Sbjct 123558 TCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGAGCCTCAGGAACC 123617 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || || || | || || || || | | || || || || || || || || ||| Sbjct 123618 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 123677 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-----TGGTGTTAGTTTATTCC 33775 || || || | | ||| || || || ||||| || || | || || |||| Sbjct 123678 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCATCATTGATCTTG--TTGTTCC 123735 Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | || | || ||| ||||||| ||| | ||||| | ||||| || || |||||||||| Sbjct 123736 AGTCGTGGAGATCCTTAGATAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCTGCCT 123795 Query 33836 TTTTATACATGTTCCAGAT 33854 | || ||||| | ||| || Sbjct 123796 TCTTGTACATTTGCCAAAT 123814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622648325507120