Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq336 143 3e-29
seq31830 138 1e-27
seq7069 93.3 5e-14
seq4446 82.4 1e-10
>seq336
Length=177044
Score = 143 bits (158), Expect = 3e-29
Identities = 456/702 (65%), Gaps = 20/702 (3%)
Strand=Plus/Minus
Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227
||||| || || | || ||||| | | ||| || |||| | || || || |||||
Sbjct 110837 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 110778
Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287
|||||||| || ||||| | || | || ||||| | | | | ||||| || ||
Sbjct 110777 AAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCG 110718
Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347
||||| || || |||||| | | | ||||| ||||| || || | ||| |||
Sbjct 110717 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 110658
Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407
|| | | | || || || ||||| || ||||| || | ||| | || ||||| || |
Sbjct 110657 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 110598
Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467
|| | | ||| || | || |||||||| | || ||||| |||| || || |||
Sbjct 110597 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCA 110538
Query 63468 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63527
||||||| || | | ||||| || || || ||||| || ||||| | ||
Sbjct 110537 GTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCA 110478
Query 63528 CATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63587
|| || | ||||| |||||||| || ||||||||||| |||||| | || ||
Sbjct 110477 CAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTATCATCCTTCATGTCGACCAGGAAG 110418
Query 63588 CAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63643
||| |||| | ||| | || || || || || || | ||||||||| |||||
Sbjct 110417 CAGGACGACA---GCTGA-GCCTGGGGCGTGCCAGCGTTGAAGAGGGTAGGAGAGGCGTG 110362
Query 63644 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATC 63697
|| || |||| | || | || |||||||||||||| ||| | || | | ||
Sbjct 110361 TGTGAAGAATTTGTTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT-TGTCTC 110303
Query 63698 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63757
|| || || || | |||||||| | ||||||||| || | || |||||||
Sbjct 110302 CC-----CAGATACCAACGGACACACGCATAATCATGTGCTGCGGGCGCTCGGCGATCTT 110248
Query 63758 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63817
| || | || | | || || |||| ||| || || ||||| || | |||
Sbjct 110247 GCCGTCAAGCTTGAGGAGATAAGAGCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTAGTT 110188
Query 63818 AAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859
||||| || ||||| | ||| | |||| ||| | |||||
Sbjct 110187 GAAGTCACGATCGTAGACAATGGCAGAGTCGAGCTCCTCCTT 110146
>seq31830
Length=311768
Score = 138 bits (152), Expect = 1e-27
Identities = 451/698 (65%), Gaps = 12/698 (2%)
Strand=Plus/Plus
Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227
||||| || || | || ||||| | | ||| || |||| | || || || |||||
Sbjct 111173 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 111232
Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287
|||||||| || ||||| | || | || ||||| | | | | ||||| || ||
Sbjct 111233 AAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCG 111292
Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347
||||| || || |||||| | | | ||||| ||||| || || | ||| |||
Sbjct 111293 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 111352
Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407
|| | | | || || || ||||| || ||||| || | ||| | || ||||| || |
Sbjct 111353 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 111412
Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467
|| | | ||| || | || |||||||| | || ||||| |||| || || |||
Sbjct 111413 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCA 111472
Query 63468 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63527
||||||| || | | ||||| || || || ||||| || ||||| | ||
Sbjct 111473 GTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCA 111532
Query 63528 CATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63587
|| || | ||||| |||||||| || ||||| ||||| |||||| || || ||
Sbjct 111533 CAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAG 111592
Query 63588 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63647
||| |||| || || || || || || || | ||||||||| ||||| ||
Sbjct 111593 CAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGTGTG 111652
Query 63648 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATCCCAT 63701
|| |||| || | || |||||||||||||| ||| | || | | ||||
Sbjct 111653 AAGAATTTGCTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT-TGTCTCCC-- 111709
Query 63702 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 63761
|| || || | |||||||| | ||||||||| || | || | |||||| |
Sbjct 111710 ---CAGATACCGACGGAAACACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTGCCG 111766
Query 63762 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63821
| | || | | ||||| |||| || || || ||||| || | ||| |||
Sbjct 111767 TCAAGCTTGAGGAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAG 111826
Query 63822 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859
|| || ||||| | ||| |||||| || | |||||
Sbjct 111827 TCACGGTCGTAGACAATGGCCGAGTCAAGCTCCTCCTT 111864
>seq7069
Length=10009
Score = 93.3 bits (102), Expect = 5e-14
Identities = 113/154 (73%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|||| || ||| |||||||| ||| ||||||||||| | | || || ||||||||
Sbjct 237 AACAGCAGACAAGCGAAATCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 178
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| || || || ||||| ||||| ||||| || ||||| || || || ||||| | |||
Sbjct 177 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATTGAGGCGAAGGCACCA 118
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33448
|||||||| || || || | || || ||||
Sbjct 117 CTGAAGAAGATACCCTCAACGACCGCGAAAGCAA 84
>seq4446
Length=444291
Score = 82.4 bits (90), Expect = 1e-10
Identities = 174/259 (67%), Gaps = 7/259 (3%)
Strand=Plus/Plus
Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660
|| || || ||||| || || ||||| || |||||||| |||| |||||| | || |
Sbjct 123558 TCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGAGCCTCAGGAACC 123617
Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720
|| || || | || || || || | | || || || || || || || || |||
Sbjct 123618 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 123677
Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-----TGGTGTTAGTTTATTCC 33775
|| || || | | ||| || || || ||||| || || | || || ||||
Sbjct 123678 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCATCATTGATCTTG--TTGTTCC 123735
Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835
| || | || ||| ||||||| ||| | ||||| | ||||| || || ||||||||||
Sbjct 123736 AGTCGTGGAGATCCTTAGATAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCTGCCT 123795
Query 33836 TTTTATACATGTTCCAGAT 33854
| || ||||| | ||| ||
Sbjct 123796 TCTTGTACATTTGCCAAAT 123814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622648325507120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |