Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq31830 322 1e-82
seq336 239 1e-57
seq31807 208 2e-48
>seq31830
Length=311768
Score = 322 bits (356), Expect = 1e-82
Identities = 1073/1643 (65%), Gaps = 60/1643 (4%)
Strand=Plus/Minus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606
||||| ||||| | || || | | ||| ||||| || | | | | ||| |||| ||
Sbjct 111654 TTCACACACGCATCTCCTACCCTCTTCAACGCTGGCACGCCTCAGGCTCAGCTGTCGTCC 111595
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| || | | |||||||| || ||| || ||||||| ||||| || ||||
Sbjct 111594 TGCTTCCTGGTTGACATGAAGGATGACAGCATTGAAGGTATCTACGACACCCTCAAGACC 111535
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725
||||| | || ||||||| || || || |||||| | | || |||| | |||||
Sbjct 111534 TGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGTCTGAACG-TCCATCGCATCCGTGC 111476
Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784
|| | | ||||||| |||||| || || || || | ||||||||||
Sbjct 111475 CACTGG-CTCTTACATTGCCGGCACCAACGGCACTTCAAACGGCATCACGCCCATGCTTC 111417
Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844
| || || |||| || ||| | ||||| |||||||| || ||||| || || |
Sbjct 111416 GCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTT 111357
Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904
|||| || || || ||||| || || ||| | || ||||| ||||| ||||| || |
Sbjct 111356 TTGCCATCTACCTTGAGCCATGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGA 111297
Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964
|| || || ||||| | || || || ||||| ||| || | ||| | | || |
Sbjct 111296 ACCACGGCAAGGAGGAGGTTCGCGCTCGCGATCTCTTCCTGGCCTTGTGGATCCCCGATC 111237
Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATG 364022
|| |||||||| || ||| | | | | | ||| | ||| | ||||| |||| ||
Sbjct 111236 TCTTCATGAAGCGTGTCGAG--AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTG 111179
Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082
|| || ||| | || | |||||||| | || || | ||||| ||||| ||
Sbjct 111178 CCCTGGCCTTGCTGACTGCTACGGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAA 111119
Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142
|| || |||| || ||||| || || |||||||| |||| ||| || | || |
Sbjct 111118 GGCTGGCAAGGGCCGCAAGACCATCAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGC 111059
Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202
|||| ||||| || | |||| ||| | ||||| ||| |||||||||||| |||
Sbjct 111058 TCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAA 110999
Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACA 364261
|||| || |||||||||| |||| |||| |||||| || || |||||| | || |||
Sbjct 110998 CCAGAAGAACCTTGGTACCATTC-GCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACT 110940
Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGT---TTG 364318
| || ||||| ||| |||||| || ||||| || || | || || || || | |||
Sbjct 110939 CGGCACCCGATGAGGTTGCCGTCTGCAACCTGGCCTCTCTGGCCCTGCCCGCCTACGTTG 110880
Query 364319 --TA-AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATG-CTACT 364374
|| || | || | |||| | || | || | | || || ||| | | |
Sbjct 110879 ATTACAACAACGGCGTGTATGACTTCAAGAAGCTCCACCAGGTCAC---TCAGGTCGTCG 110823
Query 364375 T--GCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----A 364427
| | || ||| ||| | | |||||| ||| |||| || | || || || |
Sbjct 110822 TCAGGAACCTCAACAGGATCATCGACGTGAACCATTACCCCGTCATCGAGGCTCGCAACA 110763
Query 364428 GCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTT 364487
|| || ||||| ||||| || ||||| |||||||| |||||| | ||||| | |||
Sbjct 110762 GC-----AACATGCGCCATCGGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGCTTT 110708
Query 364488 TATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTT 364547
| ||| ||| | ||||| || ||||| || | || || ||| |||||||
Sbjct 110707 CCTTGCTCTCCGCATGCCCTTTGAGTCTCCTGAGGCCAAGGAGCTCAACAAGCAGATCTT 110648
Query 364548 TGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAAC---CAAGGG 364604
||| || || || || || |||| | ||| || |||| | || | |
Sbjct 110647 TGAGACCATCTACCACGCTGCCCTGAC-----CATGTCAT---GCAAGCTCGCTCAGGAG 110596
Query 364605 AAAG-----TACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGAT 364659
||| ||||| || |||||||| || || | || ||||| | | || | ||
Sbjct 110595 GAAGGCCCCTACTCCACCTATGAGGGCTCGCCCGTCTCCCAGGGTATCCTTCAATACGAC 110536
Query 364660 CTATGGAATGTCACGCCATCTGTCCGATGGAACTGGG-ATACGCTACGTTCCAACGTTAA 364718
| ||||| |||| ||| ||| || ||| |||||| || | | || | | ||
Sbjct 110535 ATGTGGAACGTCAAGCCTACTGACCTTTGGGACTGGGCCGACCTGAAGAGCC-AGATCAA 110477
Query 364719 GAAGCATGGTACTCGCAAC--TC-CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGC 364775
| | || || || ||| || ||||| ||||||||||||||||| ||| |
Sbjct 110476 GCAACACGGCGTCCGTAACAGTCTTCTCGT---GGCGCCCATGCCCACGGCCAGTACCTC 110420
Query 364776 ACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAG--CAATCTTTATTCACGC 364833
|||||||| || ||||||||||||||||| || ||||| | ||| | || ||
Sbjct 110419 GCAGATCCTTGGCAACAACGAGTGCTTCGAGCC--TTACACGTCCAACATCTACCAGCGT 110362
Query 364834 CGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGAC 364893
|| || || |||| || || | ||| || || | || ||||||||||| |||
Sbjct 110361 CGTGTGCTCGCCGGCGAGTTCCAGGTCGTCAACCCCTGGCTGCTCAAGGATCTTGTTGAC 110302
Query 364894 CGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAG 364953
|| || ||| ||| ||||||||||| ||||| |||| |||||||| | |||
Sbjct 110301 ATGGGTCTTTGGTCTGATAGCATGAAGAATCGCATCATTGCCGAGAATGGTTCCATCCAG 110242
Query 364954 AACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCC 365013
||||| || |||| | || | ||| | | ||||| || || ||||| |||||
Sbjct 110241 AACATCCCCAACATTCCCGCCGACGTCAAGTCCCTGTACAAGACTGTCTGGGAGATTTCT 110182
Query 365014 ATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCG 365073
||| || | | | ||||| |||||||| ||||| || ||| ||| ||||||
Sbjct 110181 CAGCGCACCGTTGTGCAGATGGCTGCCGATCGTGGTGCCTTCATCGACCAGTCCCAGTCC 110122
Query 365074 TTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGG 365133
|| ||| | ||||| | || ||| | |||| | || |||||| ||| |||
Sbjct 110121 TTGAACATTCACATGAAGGACCCTACCATGGGCAAGATCACGAGCATGCACTTCGCCGGC 110062
Query 365134 TGGAAATCCGGTCTTAAGACAGG 365156
||||| || || ||||| ||
Sbjct 110061 TGGAAGCTTGGCCTCAAGACCGG 110039
>seq336
Length=177044
Score = 239 bits (264), Expect = 1e-57
Identities = 513/757 (68%), Gaps = 10/757 (1%)
Strand=Plus/Plus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606
||||| |||||| | || || | | ||| ||||| || | | | ||| |||| ||
Sbjct 110356 TTCACACACGCCTCTCCTACCCTCTTCAACGCTGGCACGCCCCAGGCTCAGCTGTCGTCC 110415
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| || | | |||||||| ||| ||| || ||||||| ||||| || ||||
Sbjct 110416 TGCTTCCTGGTCGACATGAAGGATGATAGCATTGAAGGTATCTACGACACCCTCAAGACC 110475
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725
||||| | || ||||||| || || || |||||| | | || |||| | |||||
Sbjct 110476 TGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGTCTGAACG-TCCATCGCATCCGTGC 110534
Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784
|| | | ||||||| |||||| || || || || | ||||||||||
Sbjct 110535 CACTGG-CTCTTACATTGCCGGCACCAACGGCACTTCAAACGGCATCACGCCCATGCTTC 110593
Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844
| || || |||| || ||| | ||||| |||||||| || ||||| || || |
Sbjct 110594 GCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTT 110653
Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904
|||| || || || ||||| || || ||| | || ||||| ||||| ||||| || |
Sbjct 110654 TTGCCATCTACCTTGAGCCATGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGA 110713
Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964
|| || || ||||| | || || || ||||| ||| || | ||| | | || |
Sbjct 110714 ACCACGGCAAGGAGGAGGTTCGCGCTCGCGATCTCTTCCTGGCCTTGTGGATCCCCGATC 110773
Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATG 364022
|| |||||||| || ||| | | | | | ||| | ||| | ||||| |||| ||
Sbjct 110774 TCTTCATGAAGCGTGTCGAG--AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTG 110831
Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082
|| || ||| | || | |||||||| | || || | ||||| ||||| ||
Sbjct 110832 CCCTGGCCTTGCTGACTGCTACGGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAA 110891
Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142
|| || |||| || ||||| || || |||||||| |||| ||| || | || |
Sbjct 110892 GGCTGGCAAGGGCCGCAAGACCATCAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGC 110951
Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202
|||| ||||| || | |||| ||| | ||||| ||| |||||||||||| |||
Sbjct 110952 TCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAA 111011
Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACA 364261
|||| || |||||||||| |||| |||| |||||| || || |||||| | || |||
Sbjct 111012 CCAGAAGAACCTTGGTACCATTC-GCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACT 111070
Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTC 364298
| || ||||| ||| |||||| || ||||| || ||
Sbjct 111071 CGGCACCCGATGAGGTTGCCGTCTGCAACCTGGCCTC 111107
Score = 91.5 bits (100), Expect = 4e-13
Identities = 176/260 (68%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 364897 GGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAAC 364956
|| || ||| ||| |||||||||||| ||||| || | |||||||| | ||||||
Sbjct 112691 GGTCTTTGGTCTGATAGCATGAAGAACCGCATCATTGCAGAAAATGGTTCCATCCAGAAC 112750
Query 364957 ATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATG 365016
||||| |||| | || | ||| | | ||||| || || ||||| ||||| |
Sbjct 112751 ATTCCCAACATTCCCGCCGACATCAAGTCCCTGTACAAGACTGTCTGGGAGATTTCTCAG 112810
Query 365017 CGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTT 365076
|| || || || | ||||| |||||||| ||||| || ||| ||| ||||| ||
Sbjct 112811 CGCACCGTCGTTCAGATGGCTGCCGATCGTGGTGCCTTCATCGACCAGTCTCAGTCCTTG 112870
Query 365077 AACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGG 365136
||| | ||||| | || ||| | |||| | || |||||| ||| ||| |||
Sbjct 112871 AACATTCACATGAAGGACCCTACCATGGGCAAGATCACGAGCATGCACTTCGCCGGCTGG 112930
Query 365137 AAATCCGGTCTTAAGACAGG 365156
|| || || ||||| ||
Sbjct 112931 AAGCTTGGCCTCAAGACCGG 112950
>seq31807
Length=5160
Score = 208 bits (230), Expect = 2e-48
Identities = 453/668 (68%), Gaps = 10/668 (1%)
Strand=Plus/Minus
Query 363636 CATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGG 363695
||| || ||||||| ||||| || |||| ||||| | || ||||||| || || ||
Sbjct 5158 CATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGG 5099
Query 363696 AATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACAGGG 363753
|||||| | | || |||| | ||||| || | | ||||||| ||||||
Sbjct 5098 TATTGGTCTGAACG-TCCATCGCATCCGTGCCACTGG-CTCTTACATTGCCGGCACCAAC 5041
Query 363754 GGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTC 363813
|| || || || | ||||||||||| || || |||| || ||| | |||||
Sbjct 5040 GGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTT 4981
Query 363814 GACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCC 363873
|||||||| || ||||| || || ||||| || || || ||||| || ||
Sbjct 4980 GACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCT 4921
Query 363874 GATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGT 363933
||| | || ||||| ||||| ||||| || ||| || || ||||| | || || ||
Sbjct 4920 GATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCTCGC 4861
Query 363934 GATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAG 363993
||||| ||| || | ||| | | || | || |||||||| || ||| | | | |
Sbjct 4860 GATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG--AAGAACG 4803
Query 363994 A--ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACG 364051
| ||| | ||| | ||||| |||| || || || ||| | || | |||||||
Sbjct 4802 GCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTACGGTGACG 4743
Query 364052 ACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCG 364111
| | || || | ||||| ||||| || || || |||| || ||||| || |
Sbjct 4742 AGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAAGACCATCAAGG 4683
Query 364112 CACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGT 364171
| |||||||| |||| ||| || | || | |||| ||||| || | |||| |||
Sbjct 4682 CGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGC 4623
Query 364172 TGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG- 364230
| ||||| ||| |||||||||||| ||||||| || |||||||||| |||| ||||
Sbjct 4622 TCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTC-GCAGC 4564
Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAAC 364290
|||||| || || |||||| | || ||| | || ||||| ||| |||||| || |||
Sbjct 4563 TCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCGTCTGCAAC 4504
Query 364291 CTTGCGTC 364298
|| || ||
Sbjct 4503 CTGGCCTC 4496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1302712650614724
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