Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq31830 322 1e-82 seq336 239 1e-57 seq31807 208 2e-48 >seq31830 Length=311768 Score = 322 bits (356), Expect = 1e-82 Identities = 1073/1643 (65%), Gaps = 60/1643 (4%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| | || || | | ||| ||||| || | | | | ||| |||| || Sbjct 111654 TTCACACACGCATCTCCTACCCTCTTCAACGCTGGCACGCCTCAGGCTCAGCTGTCGTCC 111595 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || ||| || ||||||| ||||| || |||| Sbjct 111594 TGCTTCCTGGTTGACATGAAGGATGACAGCATTGAAGGTATCTACGACACCCTCAAGACC 111535 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || ||||||| || || || |||||| | | || |||| | ||||| Sbjct 111534 TGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGTCTGAACG-TCCATCGCATCCGTGC 111476 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | | ||||||| |||||| || || || || | |||||||||| Sbjct 111475 CACTGG-CTCTTACATTGCCGGCACCAACGGCACTTCAAACGGCATCACGCCCATGCTTC 111417 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 | || || |||| || ||| | ||||| |||||||| || ||||| || || | Sbjct 111416 GCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTT 111357 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 |||| || || || ||||| || || ||| | || ||||| ||||| ||||| || | Sbjct 111356 TTGCCATCTACCTTGAGCCATGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGA 111297 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || || ||||| | || || || ||||| ||| || | ||| | | || | Sbjct 111296 ACCACGGCAAGGAGGAGGTTCGCGCTCGCGATCTCTTCCTGGCCTTGTGGATCCCCGATC 111237 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATG 364022 || |||||||| || ||| | | | | | ||| | ||| | ||||| |||| || Sbjct 111236 TCTTCATGAAGCGTGTCGAG--AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTG 111179 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 || || ||| | || | |||||||| | || || | ||||| ||||| || Sbjct 111178 CCCTGGCCTTGCTGACTGCTACGGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAA 111119 Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 || || |||| || ||||| || || |||||||| |||| ||| || | || | Sbjct 111118 GGCTGGCAAGGGCCGCAAGACCATCAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGC 111059 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 |||| ||||| || | |||| ||| | ||||| ||| |||||||||||| ||| Sbjct 111058 TCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAA 110999 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACA 364261 |||| || |||||||||| |||| |||| |||||| || || |||||| | || ||| Sbjct 110998 CCAGAAGAACCTTGGTACCATTC-GCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACT 110940 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGT---TTG 364318 | || ||||| ||| |||||| || ||||| || || | || || || || | ||| Sbjct 110939 CGGCACCCGATGAGGTTGCCGTCTGCAACCTGGCCTCTCTGGCCCTGCCCGCCTACGTTG 110880 Query 364319 --TA-AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATG-CTACT 364374 || || | || | |||| | || | || | | || || ||| | | | Sbjct 110879 ATTACAACAACGGCGTGTATGACTTCAAGAAGCTCCACCAGGTCAC---TCAGGTCGTCG 110823 Query 364375 T--GCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----A 364427 | | || ||| ||| | | |||||| ||| |||| || | || || || | Sbjct 110822 TCAGGAACCTCAACAGGATCATCGACGTGAACCATTACCCCGTCATCGAGGCTCGCAACA 110763 Query 364428 GCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTT 364487 || || ||||| ||||| || ||||| |||||||| |||||| | ||||| | ||| Sbjct 110762 GC-----AACATGCGCCATCGGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGCTTT 110708 Query 364488 TATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTT 364547 | ||| ||| | ||||| || ||||| || | || || ||| ||||||| Sbjct 110707 CCTTGCTCTCCGCATGCCCTTTGAGTCTCCTGAGGCCAAGGAGCTCAACAAGCAGATCTT 110648 Query 364548 TGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAAC---CAAGGG 364604 ||| || || || || || |||| | ||| || |||| | || | | Sbjct 110647 TGAGACCATCTACCACGCTGCCCTGAC-----CATGTCAT---GCAAGCTCGCTCAGGAG 110596 Query 364605 AAAG-----TACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGAT 364659 ||| ||||| || |||||||| || || | || ||||| | | || | || Sbjct 110595 GAAGGCCCCTACTCCACCTATGAGGGCTCGCCCGTCTCCCAGGGTATCCTTCAATACGAC 110536 Query 364660 CTATGGAATGTCACGCCATCTGTCCGATGGAACTGGG-ATACGCTACGTTCCAACGTTAA 364718 | ||||| |||| ||| ||| || ||| |||||| || | | || | | || Sbjct 110535 ATGTGGAACGTCAAGCCTACTGACCTTTGGGACTGGGCCGACCTGAAGAGCC-AGATCAA 110477 Query 364719 GAAGCATGGTACTCGCAAC--TC-CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGC 364775 | | || || || ||| || ||||| ||||||||||||||||| ||| | Sbjct 110476 GCAACACGGCGTCCGTAACAGTCTTCTCGT---GGCGCCCATGCCCACGGCCAGTACCTC 110420 Query 364776 ACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAG--CAATCTTTATTCACGC 364833 |||||||| || ||||||||||||||||| || ||||| | ||| | || || Sbjct 110419 GCAGATCCTTGGCAACAACGAGTGCTTCGAGCC--TTACACGTCCAACATCTACCAGCGT 110362 Query 364834 CGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGAC 364893 || || || |||| || || | ||| || || | || ||||||||||| ||| Sbjct 110361 CGTGTGCTCGCCGGCGAGTTCCAGGTCGTCAACCCCTGGCTGCTCAAGGATCTTGTTGAC 110302 Query 364894 CGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAG 364953 || || ||| ||| ||||||||||| ||||| |||| |||||||| | ||| Sbjct 110301 ATGGGTCTTTGGTCTGATAGCATGAAGAATCGCATCATTGCCGAGAATGGTTCCATCCAG 110242 Query 364954 AACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCC 365013 ||||| || |||| | || | ||| | | ||||| || || ||||| ||||| Sbjct 110241 AACATCCCCAACATTCCCGCCGACGTCAAGTCCCTGTACAAGACTGTCTGGGAGATTTCT 110182 Query 365014 ATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCG 365073 ||| || | | | ||||| |||||||| ||||| || ||| ||| |||||| Sbjct 110181 CAGCGCACCGTTGTGCAGATGGCTGCCGATCGTGGTGCCTTCATCGACCAGTCCCAGTCC 110122 Query 365074 TTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGG 365133 || ||| | ||||| | || ||| | |||| | || |||||| ||| ||| Sbjct 110121 TTGAACATTCACATGAAGGACCCTACCATGGGCAAGATCACGAGCATGCACTTCGCCGGC 110062 Query 365134 TGGAAATCCGGTCTTAAGACAGG 365156 ||||| || || ||||| || Sbjct 110061 TGGAAGCTTGGCCTCAAGACCGG 110039 >seq336 Length=177044 Score = 239 bits (264), Expect = 1e-57 Identities = 513/757 (68%), Gaps = 10/757 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || || | | ||| ||||| || | | | ||| |||| || Sbjct 110356 TTCACACACGCCTCTCCTACCCTCTTCAACGCTGGCACGCCCCAGGCTCAGCTGTCGTCC 110415 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| ||| ||| || ||||||| ||||| || |||| Sbjct 110416 TGCTTCCTGGTCGACATGAAGGATGATAGCATTGAAGGTATCTACGACACCCTCAAGACC 110475 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || ||||||| || || || |||||| | | || |||| | ||||| Sbjct 110476 TGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGTCTGAACG-TCCATCGCATCCGTGC 110534 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | | ||||||| |||||| || || || || | |||||||||| Sbjct 110535 CACTGG-CTCTTACATTGCCGGCACCAACGGCACTTCAAACGGCATCACGCCCATGCTTC 110593 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 | || || |||| || ||| | ||||| |||||||| || ||||| || || | Sbjct 110594 GCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTT 110653 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 |||| || || || ||||| || || ||| | || ||||| ||||| ||||| || | Sbjct 110654 TTGCCATCTACCTTGAGCCATGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGA 110713 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || || ||||| | || || || ||||| ||| || | ||| | | || | Sbjct 110714 ACCACGGCAAGGAGGAGGTTCGCGCTCGCGATCTCTTCCTGGCCTTGTGGATCCCCGATC 110773 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATG 364022 || |||||||| || ||| | | | | | ||| | ||| | ||||| |||| || Sbjct 110774 TCTTCATGAAGCGTGTCGAG--AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTG 110831 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 || || ||| | || | |||||||| | || || | ||||| ||||| || Sbjct 110832 CCCTGGCCTTGCTGACTGCTACGGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAA 110891 Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 || || |||| || ||||| || || |||||||| |||| ||| || | || | Sbjct 110892 GGCTGGCAAGGGCCGCAAGACCATCAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGC 110951 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 |||| ||||| || | |||| ||| | ||||| ||| |||||||||||| ||| Sbjct 110952 TCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAA 111011 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACA 364261 |||| || |||||||||| |||| |||| |||||| || || |||||| | || ||| Sbjct 111012 CCAGAAGAACCTTGGTACCATTC-GCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACT 111070 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTC 364298 | || ||||| ||| |||||| || ||||| || || Sbjct 111071 CGGCACCCGATGAGGTTGCCGTCTGCAACCTGGCCTC 111107 Score = 91.5 bits (100), Expect = 4e-13 Identities = 176/260 (68%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 364897 GGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAAC 364956 || || ||| ||| |||||||||||| ||||| || | |||||||| | |||||| Sbjct 112691 GGTCTTTGGTCTGATAGCATGAAGAACCGCATCATTGCAGAAAATGGTTCCATCCAGAAC 112750 Query 364957 ATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATG 365016 ||||| |||| | || | ||| | | ||||| || || ||||| ||||| | Sbjct 112751 ATTCCCAACATTCCCGCCGACATCAAGTCCCTGTACAAGACTGTCTGGGAGATTTCTCAG 112810 Query 365017 CGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTT 365076 || || || || | ||||| |||||||| ||||| || ||| ||| ||||| || Sbjct 112811 CGCACCGTCGTTCAGATGGCTGCCGATCGTGGTGCCTTCATCGACCAGTCTCAGTCCTTG 112870 Query 365077 AACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGG 365136 ||| | ||||| | || ||| | |||| | || |||||| ||| ||| ||| Sbjct 112871 AACATTCACATGAAGGACCCTACCATGGGCAAGATCACGAGCATGCACTTCGCCGGCTGG 112930 Query 365137 AAATCCGGTCTTAAGACAGG 365156 || || || ||||| || Sbjct 112931 AAGCTTGGCCTCAAGACCGG 112950 >seq31807 Length=5160 Score = 208 bits (230), Expect = 2e-48 Identities = 453/668 (68%), Gaps = 10/668 (1%) Strand=Plus/Minus Query 363636 CATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGG 363695 ||| || ||||||| ||||| || |||| ||||| | || ||||||| || || || Sbjct 5158 CATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGG 5099 Query 363696 AATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACAGGG 363753 |||||| | | || |||| | ||||| || | | ||||||| |||||| Sbjct 5098 TATTGGTCTGAACG-TCCATCGCATCCGTGCCACTGG-CTCTTACATTGCCGGCACCAAC 5041 Query 363754 GGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTC 363813 || || || || | ||||||||||| || || |||| || ||| | ||||| Sbjct 5040 GGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTT 4981 Query 363814 GACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCC 363873 |||||||| || ||||| || || ||||| || || || ||||| || || Sbjct 4980 GACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCT 4921 Query 363874 GATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGT 363933 ||| | || ||||| ||||| ||||| || ||| || || ||||| | || || || Sbjct 4920 GATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCTCGC 4861 Query 363934 GATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAG 363993 ||||| ||| || | ||| | | || | || |||||||| || ||| | | | | Sbjct 4860 GATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG--AAGAACG 4803 Query 363994 A--ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACG 364051 | ||| | ||| | ||||| |||| || || || ||| | || | ||||||| Sbjct 4802 GCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTACGGTGACG 4743 Query 364052 ACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCG 364111 | | || || | ||||| ||||| || || || |||| || ||||| || | Sbjct 4742 AGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAAGACCATCAAGG 4683 Query 364112 CACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGT 364171 | |||||||| |||| ||| || | || | |||| ||||| || | |||| ||| Sbjct 4682 CGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGC 4623 Query 364172 TGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG- 364230 | ||||| ||| |||||||||||| ||||||| || |||||||||| |||| |||| Sbjct 4622 TCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTC-GCAGC 4564 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAAC 364290 |||||| || || |||||| | || ||| | || ||||| ||| |||||| || ||| Sbjct 4563 TCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCGTCTGCAAC 4504 Query 364291 CTTGCGTC 364298 || || || Sbjct 4503 CTGGCCTC 4496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302712650614724