Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq9080 136 3e-27 seq32817 129 4e-25 >seq9080 Length=8040 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 6657 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6598 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 6597 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 6563 >seq32817 Length=24951 Score = 129 bits (142), Expect = 4e-25 Identities = 217/314 (69%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 ||||| ||| |||| || ||| ||||||||||||||| ||| |||| || || Sbjct 19514 AACGTTCGTCGCGATGTCGCCGACCAGTTCTACCGCTACAAGATGGAGCGCCTCCAGACC 19573 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||| | ||||| ||||| || || || || ||||||||||||||| || | ||||| Sbjct 19574 AAGATTGAGGGCAAGGGCAATGGCATCAAGACCGTCATTGTCAACCTGACCAGTGTCGCC 19633 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 || | || | ||||| | | |||||| | || || ||||| | ||| || || || Sbjct 19634 CAGTCTCTGGCCCGCCCCGGCGCCTACCTCATCAAGTACTTCGGTTTCGAGCTCGGTGCC 19693 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413 ||||| | |||| | | |||| || | ||| | ||||| | || | || Sbjct 19694 CAGACCAACATTGACCCCGCCGACGATCGTTGGATCATCAACGGTGCCCACGATGGCCCC 19753 Query 6414 AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGAT 6473 ||||||||||| ||||||||||| || ||||||| ||||| || | | ||| | Sbjct 19754 AAGCTGCAGGATCACCTTGACGGCTTCATCAGCAAGTTCGTGCTTTGCAAGAAGTGCAAG 19813 Query 6474 AACCCGGAGACCGA 6487 ||||| ||||| || Sbjct 19814 AACCCTGAGACGGA 19827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334790518189442