Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq336 127 3e-24 seq31830 122 1e-22 seq7069 84.2 3e-11 seq4446 82.4 1e-10 >seq336 Length=177044 Score = 127 bits (140), Expect = 3e-24 Identities = 454/705 (64%), Gaps = 20/705 (3%) Strand=Plus/Minus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || ||||| || || | || ||||| | | ||| || |||| | || || || ||| Sbjct 110840 AGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTC 110781 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || |||||||| || ||||| | || | || ||||| | | | | ||||| || Sbjct 110780 ATGAAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTG 110721 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| || || |||||| | | | ||||| ||||| || || | ||| Sbjct 110720 CCGTGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAG 110661 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | | || || || ||||| || ||||| || | ||| | || ||||| || Sbjct 110660 ATGGCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTG 110601 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | || | | ||| || | || || || || || || ||||| || | || || Sbjct 110600 AAGACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAG 110541 Query 63320 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379 ||| ||||||| || | | ||||| || || || ||||| || ||||| | Sbjct 110540 CCAGTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATG 110481 Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439 || || || | || || ||||| || || || ||||||||| |||||| | || Sbjct 110480 GCACAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTATCATCCTTCATGTCGACCAGG 110421 Query 63440 AAACAGCTAGACATTTGGTGACGACTAG----TTCCCGCATTAAATAAGGTAGGAGAAGC 63495 || ||| |||| | ||| | || | | || || || || | ||||||||| || Sbjct 110420 AAGCAGGACGACA---GCTGA-GCCTGGGGCGTGCCAGCGTTGAAGAGGGTAGGAGAGGC 110365 Query 63496 GTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTAT 63549 ||| || || |||| | || | || |||||||||||||| ||| | || | | Sbjct 110364 GTGTGTGAAGAATTTGTTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT-TGT 110306 Query 63550 ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 63609 |||| || || || | |||||||| | ||||||||| || | || |||| Sbjct 110305 CTCCC-----CAGATACCAACGGACACACGCATAATCATGTGCTGCGGGCGCTCGGCGAT 110251 Query 63610 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669 |||| || | || | | || || |||| ||| || || ||||| || | ||| Sbjct 110250 CTTGCCGTCAAGCTTGAGGAGATAAGAGCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTA 110191 Query 63670 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 ||||| || ||||| | ||| | |||| ||| | ||||| Sbjct 110190 GTTGAAGTCACGATCGTAGACAATGGCAGAGTCGAGCTCCTCCTT 110146 >seq31830 Length=311768 Score = 122 bits (134), Expect = 1e-22 Identities = 449/701 (64%), Gaps = 12/701 (2%) Strand=Plus/Plus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || ||||| || || | || ||||| | | ||| || |||| | || || || ||| Sbjct 111170 AGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTC 111229 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || |||||||| || ||||| | || | || ||||| | | | | ||||| || Sbjct 111230 ATGAAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTG 111289 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| || || |||||| | | | ||||| ||||| || || | ||| Sbjct 111290 CCGTGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAG 111349 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | | || || || ||||| || ||||| || | ||| | || ||||| || Sbjct 111350 ATGGCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTG 111409 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | || | | ||| || | || || || || || || ||||| || | || || Sbjct 111410 AAGACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAG 111469 Query 63320 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379 ||| ||||||| || | | ||||| || || || ||||| || ||||| | Sbjct 111470 CCAGTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATG 111529 Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439 || || || | || || ||||| || || || || |||||| |||||| || || Sbjct 111530 GCACAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGG 111589 Query 63440 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGA 63499 || ||| |||| || || || || || || || | ||||||||| ||||| Sbjct 111590 AAGCAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGT 111649 Query 63500 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATCC 63553 || || |||| || | || |||||||||||||| ||| | || | | ||| Sbjct 111650 GTGAAGAATTTGCTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT-TGTCTCC 111708 Query 63554 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63613 | || || || | |||||||| | ||||||||| || | || | |||||| Sbjct 111709 C-----CAGATACCGACGGAAACACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTG 111763 Query 63614 TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 63673 || | || | | ||||| |||| || || || ||||| || | ||| Sbjct 111764 CCGTCAAGCTTGAGGAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTG 111823 Query 63674 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 ||||| || ||||| | ||| |||||| || | ||||| Sbjct 111824 AAGTCACGGTCGTAGACAATGGCCGAGTCAAGCTCCTCCTT 111864 >seq7069 Length=10009 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| || ||| |||||||| ||| ||||||||||| | | || | |||||||| Sbjct 237 AACAGCAGACAAGCGAAATCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 178 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || || || ||||| ||||| ||||| || ||||| || || || || || | ||| Sbjct 177 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATTGAGGCGAAGGCACCA 118 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 32805 ||||| || || || || |||| || |||| Sbjct 117 CTGAAGAAGATACCCTCAACGACCGCGAAAGCAA 84 >seq4446 Length=444291 Score = 82.4 bits (90), Expect = 1e-10 Identities = 174/259 (67%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || || || ||||| || || || || || ||||||||||||| |||||| | || | Sbjct 123558 TCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGAGCCTCAGGAACC 123617 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || || || | || || || || | | || || || || || || || || ||| Sbjct 123618 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 123677 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-----TGGTGTTAGTTTATTCC 33132 || || || | | ||| || || || ||||| || || | || || |||| Sbjct 123678 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCATCATTGATCTTG--TTGTTCC 123735 Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 | || | || ||| ||||||| ||| | ||||| | ||||| || || |||||||||| Sbjct 123736 AGTCGTGGAGATCCTTAGATAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCTGCCT 123795 Query 33193 TTTTATACATATTCCAGAT 33211 | || ||||| | ||| || Sbjct 123796 TCTTGTACATTTGCCAAAT 123814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633327999207200