Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq20113 113 4e-20
seq8335 104 2e-17
seq2224 96.9 3e-15
seq35245 82.4 7e-11
>seq20113
Length=64481
Score = 113 bits (124), Expect = 4e-20
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||| ||||||| || ||||||| |||| || ||||| ||
Sbjct 10956 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCC 11015
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| ||||| | ||| | || | ||| ||||| || || ||||| || |||||
Sbjct 11016 GACACCATCGACAACGTCAAGTCCAAGATTCAG-GACAAGGAGGGTATTCCTCCCGACCA 11074
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | || ||||| || || || | || |||| ||| ||| || ||| |||||
Sbjct 11075 ACAGCGCCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCCGACTACAA 11134
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
||||| || || || || || ||
Sbjct 11135 CATTCAGAAGGAGTCGACTCTTCA 11158
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| | |||||||| | |||||| | ||||| || || ||
Sbjct 11184 ATGCAAATCTTCGTCAAGACACTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 11243
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| | ||| || ||| ||||| || || || || || ||||||
Sbjct 11244 GACACGATCGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAA 11303
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | ||||| || ||||| || | || |||| |||||| || || |||||
Sbjct 11304 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTGTCTGACTACAAC 11363
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || ||||| || ||
Sbjct 11364 ATCCAGAAGGAGTCGACCCTGCATTTGGTCCT 11395
>seq8335
Length=118861
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| ||||||| || ||||||| | || |||||||| ||
Sbjct 14507 ATGCAGATCTTTGTCAAGACGCTGACCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCC 14566
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || | ||| | || | ||| ||||| || || ||||| || |||||
Sbjct 14567 GACACCATTGACAACGTCAAGTCGAAGATTCAG-GACAAGGAGGGTATTCCTCCCGACCA 14625
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | || || || || || || | || |||| ||| ||| || ||| |||||
Sbjct 14626 ACAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGTACTTTGTCCGACTACAA 14685
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
||||| || || ||||| || ||
Sbjct 14686 CATTCAGAAGGAGTCCACTCTTCA 14709
>seq2224
Length=467227
Score = 96.9 bits (106), Expect = 3e-15
Identities = 131/181 (72%), Gaps = 4/181 (2%)
Strand=Plus/Plus
Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067
|| || ||||| |||| || || ||||||| | || |||||||| || ||||| |||
Sbjct 111929 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGACACCATC 111988
Query 25068 GAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGA 25125
|| || || ||| || ||| ||||| || || || || ||||||||||||||
Sbjct 111989 GA--CAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGCC 112046
Query 25126 TTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAA 25185
| ||||| |||||||| || | || |||| |||||| || ||| ||||| || || |
Sbjct 112047 TGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTTTGTCCGACTACAACATCCAGA 112106
Query 25186 A 25186
|
Sbjct 112107 A 112107
Score = 84.2 bits (92), Expect = 2e-11
Identities = 124/174 (71%), Gaps = 4/174 (2%)
Strand=Plus/Plus
Query 25015 AGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCAC 25074
|||| |||| || || ||||||| | || |||||||| || ||||| || || ||
Sbjct 102587 AGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGACACCATTGA--CAA 102644
Query 25075 TG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTT 25132
|| ||| || ||| ||||| || || || || || ||||||||||| | |||||
Sbjct 102645 TGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAACAGCGCCTGATTTT 102704
Query 25133 TGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAA 25186
|||||||| || | || |||| |||||| || ||| ||||| || || ||
Sbjct 102705 CGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 102758
>seq35245
Length=420
Score = 82.4 bits (90), Expect = 7e-11
Identities = 148/214 (69%), Gaps = 7/214 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || | ||||| | || |||||||||||
Sbjct 335 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 276
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| ||||| || || ||| || ||| ||||| || || || || || ||||
Sbjct 275 GACACCATCGA--CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACC 218
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
||||||| | | | || ||||| || | || |||| |||||| | ||| ||||
Sbjct 217 AACAGCGCCTGA---TNGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACA 161
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || || || || ||||| || || | |||||
Sbjct 160 ACATCCAGAAGGAGTCCACTCTGCACCTCGTGCT 127
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433125297557330
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |