Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq8335 131 1e-25 seq20113 122 7e-23 seq2224 107 2e-18 seq35245 102 7e-17 seq1514 100 2e-16 seq31299 82.4 6e-11 >seq8335 Length=118861 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || |||||||||| ||||| | || Sbjct 14507 ATGCAGATCTTTGTCAAGACGCTGACCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCC 14566 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||||||||| ||||| ||| Sbjct 14567 GACACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAA 14626 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | |||||| || || | ||||| |||||| Sbjct 14627 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGTACTTTGTCCGACTACAAC 14686 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || ||||| Sbjct 14687 ATTCAGAAGGAGTCCAC 14703 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | |||||||| || |||| | ||||| ||| | || Sbjct 14735 ATGCAAATCTTCGTCAAGACGCTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 14794 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || || |||||||||||||| ||||| ||||||||| Sbjct 14795 GACACGATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGATCAA 14854 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| ||||||| | || || |||||| Sbjct 14855 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCTGACTACAAC 14914 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | ||||| || | || |||| || || Sbjct 14915 ATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 14961 >seq20113 Length=64481 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || || ||||||| || || || | || Sbjct 10956 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCC 11015 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||||||||| ||||| ||| Sbjct 11016 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAA 11075 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| || || ||| | |||||| || || | ||||| |||||| Sbjct 11076 CAGCGCCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCCGACTACAAC 11135 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 11136 ATTCAGAAGGAGTCGAC 11152 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | |||||||| || |||| | ||||| ||| | || Sbjct 11184 ATGCAAATCTTCGTCAAGACACTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 11243 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || ||||||||||||||||| || ||||| ||| Sbjct 11244 GACACGATCGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAA 11303 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | |||||| |||||| | || || |||||| Sbjct 11304 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTGTCTGACTACAAC 11363 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | ||||| || | || |||| || || Sbjct 11364 ATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 11410 >seq2224 Length=467227 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| ||||| || |||| ||| | ||| || |||| Sbjct 102595 ACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGACACCATTGACAATGTCAAGTCG 102654 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || ||||| ||||| || || || || |||||||| Sbjct 102655 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAACAGCGCCTGATTTTCGCCGGCAAG 102714 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||| | |||||| |||||| | ||||| |||||||| || || Sbjct 102715 CAGCTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 102758 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || || || || |||| ||||| ||||| || |||| ||| | Sbjct 111928 TTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGACACCAT 111987 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| || || || || ||||| || || Sbjct 111988 CGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGCCT 112047 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || |||||||| ||| | |||||| |||||| | ||||| |||||||| || || Sbjct 112048 GATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTTTGTCCGACTACAACATCCAGAA 112107 >seq35245 Length=420 Score = 102 bits (112), Expect = 7e-17 Identities = 141/197 (72%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| ||||| ||||| | || Sbjct 335 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 276 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| || || ||||| ||| Sbjct 275 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAA 216 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || | | || ||||| ||| | |||||| |||||| | ||||| |||||| Sbjct 215 CAGCGCCTGA---TNGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAAC 159 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 158 ATCCAGAAGGAGTCCAC 142 >seq1514 Length=10590 Score = 100 bits (110), Expect = 2e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| ||||| || || || | || ||| | ||| | | || Sbjct 5608 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTTAAGTCG 5667 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || ||||| ||||| || || || || |||||||| Sbjct 5668 AAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAACAGCGCCTGATCTTCGCCGGCAAG 5727 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATC 22412 ||| | |||||| ||||||| | ||||| |||||||| || || || || Sbjct 5728 CAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTC 5777 >seq31299 Length=100 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || ||||| ||||| || || || ||||| ||||| Sbjct 2 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAACAGCGCCTGATTTTTGCTGGCAAG 61 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 ||| | |||||| |||||| | ||||| |||||||| Sbjct 62 CAGCTTGAGGATGGCCGCACTCTTTCCGACTACAACAT 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419531659373830