Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq23891 109 1e-18 seq8958 109 1e-18 seq18202 107 4e-18 seq33015 100 6e-16 seq28002 100 6e-16 seq4558 100 6e-16 seq10557 98.7 2e-15 seq4446 95.1 2e-14 seq3921 91.5 3e-13 seq7069 87.8 4e-12 >seq23891 Length=52563 Score = 109 bits (120), Expect = 1e-18 Identities = 286/432 (66%), Gaps = 6/432 (1%) Strand=Plus/Minus Query 87559 AAGGCCGGCAATCTTCGCGATG--CTTTTGCCAAGACGAGCGCACCATTCTTTGTCATCT 87616 ||||| || ||||| |||||| |||| || ||| || |||||| ||| | Sbjct 40922 AAGGCAGGAAATCT--GCGATGTACTTTCGCACGGACCGACGGCGAATTCTTCTGCATTT 40865 Query 87617 TCGATGCTGACTTCTGCCCGCGCAAGGACTTCATCACGGAAATTATGCCATACTTCAACT 87676 ||||||| ||||| ||||| || |||||| ||| |||| | ||| | | | Sbjct 40864 TCGATGCCGACTTTTGCCCACGTCCCGACTTCGTCAAGGAACTGATGGTTGAGCACCTCG 40805 Query 87677 ATGACAAATCCATCGCCATCGTCCAGACCCCCCAGTTCTTTGAGGTGCGTCCAGACCAGA 87736 ||||| | | ||| |||||||||| ||| |||||||| || | || |||| Sbjct 40804 ATGACGAGAAGACCGCGATCGTCCAGAGCCCTCAGTTCTTCCGTGTTCTGGATGAGCAGA 40745 Query 87737 CTTGGGTAGAGCGTGCTGCAGGTTCTGTCCAGGAACTGTTCTACCGCTTCATCCAGGTGT 87796 ||||||| |||| | ||| ||| || ||||| ||||||||||| | |||| || Sbjct 40744 CTTGGGTCGAGCAGGGTGCCGGTGCTACGCAGGAGCTGTTCTACCGTGTTGTCCAAGTCA 40685 Query 87797 CTCGCGAATC-ATTTGGCGCTGCAGTGTGCGTGGGTACTTGTGCTATGTATCGTCGCGAG 87855 ||| |||| | || ||| | | ||||| || | || ||||| || || | Sbjct 40684 ACCGC-AATCGCTGGGGTGCTTCGATTTGCGTTGGCAGCAACGCCATGTACCGCCGTGCT 40626 Query 87856 GCCCTGGTGCCATTTGGCGGCACTGCTGAAATCGGTTTCAGCGAGGATGTCCACACCGGT 87915 || || || |||| || ||||| || || |||||| ||||||||| || || || Sbjct 40625 GCTCTCGTTGACGTTGGAGGTACTGCCGAGATTGGTTTCTCCGAGGATGTTCATACAGGC 40566 Query 87916 TTCTCTGTTGTTGACGCTGGGTGGAAGCTGAAGTATGTGCCTCTGAACCTGGCCAAGGGT 87975 || | || ||| ||| |||||| | |||||| | ||||| || |||| || Sbjct 40565 TTTGGCGCGGTAGACCGTGGTTGGAAGGTCAAGTATATCCCTCTCTGTCTCGCCACCGGC 40506 Query 87976 GTCTGTCCCTAC 87987 ||||| ||| || Sbjct 40505 GTCTGCCCCGAC 40494 >seq8958 Length=8154 Score = 109 bits (120), Expect = 1e-18 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601 || || |||| ||||| |||||||| || | |||||| | ||||| || |||| Sbjct 1097 TGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAAATGTTCTCC 1038 Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661 |||||||| || ||||| || || ||||| ||| || ||| || || |||| || | Sbjct 1037 ATGAAGTCAAATGGGTTGGTTGCCTTGTAAACCTTCTCATTGCCGAGGGCGACGAGGAGG 978 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721 |||||||| || ||||| | ||||| ||| || || ||||||||||| || || | Sbjct 977 CGGTCTGCAACGAACTCAATGTACTGCTTCATGAGAGTAGCGTTCATGCCAAGCAGACCA 918 Query 251722 CAAGGAATTGCCTCACAGATGAATTCCT 251749 || |||| |||||| | ||| |||| Sbjct 917 CAGGGAAGAGCCTCAGTCAGGAACTCCT 890 >seq18202 Length=5425 Score = 107 bits (118), Expect = 4e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 ||||||| ||||||||||| || |||||||| || ||||| | || || ||||||||| Sbjct 5043 TCATTGGTCCCAATGGTGCCGGAAAGTCTACTCTGATCAAGCTGCTTACGGGCGAGACCA 4984 Query 280234 AGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 | ||| || || |||||| |||||| |||| || | |||| || |||| Sbjct 4983 TTCCTACTACCGGAAAGGTAGAGAAGCACCCCAACCTGCGTATCGGTTACATCAAACAGC 4924 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGC 280353 ||||| || | ||| | |||| || || || | |||||| ||||| ||| | ||||||| Sbjct 4923 ACGCTCTCGAGCACGTTGAGATGCATCTCGAGAAGACTCCCAACCAGTACTTGCAGTGGC 4864 Query 280354 GCTATGC 280360 | || || Sbjct 4863 GTTACGC 4857 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 280678 TGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGA 280737 ||||||| ||||| ||| || | | ||| ||| || ||||||||| ||||||| Sbjct 4472 TGGGTCTCGACCCGGAGATTGCCAACCACAACGAAATTGGCTCTCTTTCTGGTGGCCAGA 4413 Query 280738 AGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACG 280797 ||||||| | ||||| | | ||| ||||| | |||| || | |||| ||||||| Sbjct 4412 AGGTCAAGGTCGTCATTGCCGGAGCCATGTGGAACAACCCCCATCTTCTCGTGCTCGACG 4353 Query 280798 AGCCTACCAACTATCTGGACCGCGA 280822 ||||||| |||| |||||||||| Sbjct 4352 AGCCTACTAACTTCTTGGACCGCGA 4328 >seq33015 Length=1113 Score = 100 bits (110), Expect = 6e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| ||||| ||||| || |||| ||||||||||| ||| Sbjct 838 GGTGAGGACCTTTGCAACTGCACCTTCTCCCTCGCCTACGGTGCCAAGATTCTGCTCAAC 897 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| | | || ||||| | || || |||||| ||||||||| || | Sbjct 898 CAGACTCACCTTCGCCTGAAACGTGGTCAGCGTTACGGTCTCTGCGGTCCCAACGGTTCC 957 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| | |||| ||| | | ||| ||||| | ||| Sbjct 958 GGCAAGTCCACTCTCATGCGCGCCATCGACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 1016 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| || | || ||||||||| | ||||| Sbjct 1017 GAGCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTC 1058 >seq28002 Length=44460 Score = 100 bits (110), Expect = 6e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| ||||| ||||| || |||| ||||||||||| ||| Sbjct 32383 GGTGAGGACCTTTGCAACTGCACCTTCTCCCTCGCCTACGGTGCCAAGATTCTGCTCAAC 32442 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| | | || ||||| | || || |||||| ||||||||| || | Sbjct 32443 CAGACTCACCTTCGCCTGAAACGTGGTCAGCGTTACGGTCTCTGCGGTCCCAACGGTTCC 32502 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| | |||| ||| | | ||| ||||| | ||| Sbjct 32503 GGCAAGTCCACTCTCATGCGCGCCATCGACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 32561 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| || | || ||||||||| | ||||| Sbjct 32562 GAGCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTC 32603 >seq4558 Length=142475 Score = 100 bits (110), Expect = 6e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| ||||| ||||| || |||| ||||||||||| ||| Sbjct 68020 GGTGAGGACCTTTGCAACTGCACCTTCTCCCTCGCCTACGGTGCCAAGATTCTGCTCAAC 67961 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| | | || ||||| | || || |||||| ||||||||| || | Sbjct 67960 CAGACTCACCTTCGCCTGAAACGTGGTCAGCGTTACGGTCTCTGCGGTCCCAACGGTTCC 67901 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| | |||| ||| | | ||| ||||| | ||| Sbjct 67900 GGCAAGTCCACTCTCATGCGCGCCATCGACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 67842 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| || | || ||||||||| | ||||| Sbjct 67841 GAGCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTC 67800 >seq10557 Length=107145 Score = 98.7 bits (108), Expect = 2e-15 Identities = 174/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 280678 TGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGA 280737 ||||||| ||||| ||| || | | ||| ||| || ||||||||| ||||||| Sbjct 49205 TGGGTCTCGACCCGGAGATTGCCAACCACAACGAAATTGGCTCTCTTTCTGGTGGCCAGA 49146 Query 280738 AGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACG 280797 ||||||| | ||||| | | ||| ||||| | |||| || | |||| ||||||| Sbjct 49145 AGGTCAAGGTCGTCATTGCCGGAGCCATGTGGAACAACCCCCATCTTCTCGTGCTCGACG 49086 Query 280798 AGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTGAGTGCTGC--TCTG-GACA 280854 |||||||||||| |||||||||| ||| |||| ||| || ||| || | ||| Sbjct 49085 AGCCTACCAACTTCTTGGACCGCGACTCCCTCGGCGGTCTTGCTGTTGCCATCCGTGAC- 49027 Query 280855 CATTTGGCGGCGGCGTCGTAGTCATTTCTCACAGCACAGAATTTGTCAAGTCTGTGTGCT 280914 || || || ||| | ||||||| |||| | |||||| ||| | | |||| Sbjct 49026 --TTCAAGGGTGGTGTCATTCTCATTTCCCACAACGAAGAATTCGTCGGAGCGCTCTGCT 48969 Query 280915 CCGAGATGTGG 280925 ||||| |||| Sbjct 48968 CCGAGCAGTGG 48958 >seq4446 Length=444291 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601 || || |||| ||||| |||||||| || | |||||| | ||||| || |||| Sbjct 73163 TGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAAATGTTCTCC 73222 Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661 |||||||| || ||||| || || ||||| ||| || ||| || || |||| || | Sbjct 73223 ATGAAGTCAAATGGGTTGGTTGCCTTGTAAACCTTCTCATTGCCGAGGGCGACGAGGAGG 73282 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721 |||||||| || ||||| | ||||| ||| || || ||||||||| | || | | Sbjct 73283 CGGTCTGCAACGAACTCAATGTACTGCTTCATGAGAGTAGCGTTCATGCCGAGCAGGCCA 73342 Query 251722 CAAGGAATTGCCTCA 251736 || || | |||||| Sbjct 73343 CAGGGGAGAGCCTCA 73357 >seq3921 Length=218 Score = 91.5 bits (100), Expect = 3e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601 || || |||| ||||| |||||||| || | |||||| | ||||| || |||| Sbjct 49 TGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAAATGTTCTCC 108 Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661 |||||||| || ||||| || || ||||| ||| || ||| || || |||| || | Sbjct 109 ATGAAGTCAAATGGGTTGGTTGCCTTGTAAACCTTCTCATTGCCGAGGGCGACGAGGAGG 168 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCC 251711 |||||||| || ||||| | ||||| ||| || || ||||||||| Sbjct 169 CGGTCTGCAACGAACTCAATGTACTGCTTCATGAGAGTAGCGTTCATGCC 218 >seq7069 Length=10009 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||| ||||||||||| ||| ||||| ||||||||| | | |||||||||||| | || Sbjct 214 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGGCCAGGCATGAGGCC 155 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 || ||| ||||||||||||||| | |||| ||| ||| | | |||||| || Sbjct 154 TCGCTTCTTGAGCCAGAAGATTGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACGAC 95 Query 251964 CACCCATGCAACAAGGCG 251981 | | | ||||| ||||| Sbjct 94 CGCGAAAGCAACGAGGCG 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027331341339262