Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq8335 116 9e-21
seq20113 107 5e-18
seq35245 98.7 2e-15
seq4446 98.7 2e-15
seq2224 98.7 2e-15
seq8958 93.3 1e-13
seq1514 86.0 1e-11
seq3921 84.2 5e-11
>seq8335
Length=118861
Score = 116 bits (128), Expect = 9e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || ||||| |||| ||| || || || || || |||||||
Sbjct 14733 CCACCACGGAGGCGGAGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 14674
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || || || || || | || ||||| |||||||| ||||||||||| ||
Sbjct 14673 AAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGA 14614
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || |||| || ||||| || || | ||| || || ||
Sbjct 14613 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 14554
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| |||||||| |||||||| || ||||||||
Sbjct 14553 TCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 14507
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|||||||| || || | || || | ||| | || || || ||||| || |||||
Sbjct 14964 TGTCCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCA 14905
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || ||||| ||||| || | || || || ||||| ||||| |||||||||
Sbjct 14904 GACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGA 14845
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || || || ||||| || | ||||| || || || | ||| |||||
Sbjct 14844 GGAATGCCCTCCTTGTCTTGGATCTTGGACTTCACATTGTCGATCGTGTCGGATGATTCG 14785
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | ||||| ||||| ||||| || ||||||||||| || |||||
Sbjct 14784 ACTTCCAATGTGATAGTCTTACCGGTGAGCGTCTTGACGAAGATTTGCAT 14735
>seq20113
Length=64481
Score = 107 bits (118), Expect = 5e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || ||||| |||| || || || || || || |||||||
Sbjct 11182 CCACCACGAAGGCGGAGAACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAC 11123
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || ||||| || ||||| || |||||||| ||
Sbjct 11122 AGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGA 11063
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || || | || ||||| || || | ||| || || ||
Sbjct 11062 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAACC 11003
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| ||||||||||||||||| || ||||||||
Sbjct 11002 TCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 10956
Score = 104 bits (114), Expect = 6e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|||||||| || || | || || | ||| | || || || ||||| || |||||
Sbjct 11413 TGTCCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCA 11354
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || ||||| || || || | || || || ||||| ||||| ||||||||
Sbjct 11353 GACAGGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGA 11294
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || || || ||||| || | || ||||| || || | ||| |||||
Sbjct 11293 GGGATACCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGATGATTCG 11234
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | ||||| ||||| ||||| || ||||||||||| || |||||
Sbjct 11233 ACTTCCAATGTGATAGTCTTACCGGTGAGTGTCTTGACGAAGATTTGCAT 11184
>seq35245
Length=420
Score = 98.7 bits (108), Expect = 2e-15
Identities = 160/230 (70%), Gaps = 3/230 (1%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || ||||| || | ||| || || ||||| || |||||||
Sbjct 112 CCACCACGCAGGCGGAGCACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 171
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || || | |||| |||||||| |||
Sbjct 172 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCNA---TCAGGCGCTGTTGGTCGGGGGGG 228
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || || || || || | ||| ||| || ||
Sbjct 229 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 288
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476
|| || ||||| ||||| || || || ||||||||||| |||||||| ||
Sbjct 289 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 338
>seq4446
Length=444291
Score = 98.7 bits (108), Expect = 2e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 269117 AAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGA 269176
|||||||| | ||| ||| |||| ||| || |||| ||||| || ||||||||
Sbjct 73370 AAGAGTTCCTGACTGAGGCTCTCCCCTGTGGCCTGCTCGGCATGAACGCTACTCTCATGA 73311
Query 269177 ATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGT 269236
| || || || || ||||| || || || || || || ||||| ||||||| || |
Sbjct 73310 AGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTCGCCCTCGGCAATGAGAAGGTTT 73251
Query 269237 ACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACT 269296
|||| | | || || || | ||| ||||| ||||| || | || ||||| ||||
Sbjct 73250 ACAAGGCAACCAACCCATTTGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACT 73191
Query 269297 TCTTCGAAAAGCGTGTC 269313
||||||| |||||||||
Sbjct 73190 TCTTCGAGAAGCGTGTC 73174
>seq2224
Length=467227
Score = 98.7 bits (108), Expect = 2e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||||| | ||||| || || || | || || || ||||| |||
Sbjct 112107 TTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATC 112048
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405
|| |||||||| | ||||| || || || |||||||| |||| || || || ||
Sbjct 112047 AGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 111988
Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|| | ||| || || || || || ||||| ||||| || ||||| |||||||||||
Sbjct 111987 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 111929
>seq8958
Length=8154
Score = 93.3 bits (102), Expect = 1e-13
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157
|| || || || | ||| | |||||| | ||| ||| | || ||| | || | ||
Sbjct 871 GATGCTGTCACTATCGAGCAGGAGTTCCTGACTGAGGCTCTTCCCTGTGGTCTGCTTGGC 930
Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCA 269217
||||| || ||||||||| || || || || ||||| || || || || || ||
Sbjct 931 ATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTCGCC 990
Query 269218 CTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCG 269277
||||| ||||||| || ||||| | | || || || | ||| ||||| |||||
Sbjct 991 CTCGGCAATGAGAAGGTTTACAAGGCAACCAACCCATTTGACTTCATGGAGAACATTTCT 1050
Query 269278 CTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTC 269313
|| | || ||||| ||||||||||| |||||||||
Sbjct 1051 CTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTC 1086
>seq1514
Length=10590
Score = 86.0 bits (94), Expect = 1e-11
Identities = 119/167 (71%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| || ||||| || || || | || || || ||||||
Sbjct 5774 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAG 5715
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||| |||||||| ||||| || || || |||||||| |||| || |||||
Sbjct 5714 ATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTTG 5655
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449
|| || | || || || || || || ||||| ||||| |||||
Sbjct 5654 TCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 5608
>seq3921
Length=218
Score = 84.2 bits (92), Expect = 5e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 269155 GGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACG 269214
|| ||||| || ||||||||| || || || || ||||| || || || || ||
Sbjct 218 GGCATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTC 159
Query 269215 GCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATT 269274
|| ||||| ||||||| || ||||| | | || || || | ||| ||||| |||
Sbjct 158 GCCCTCGGCAATGAGAAGGTTTACAAGGCAACCAACCCATTTGACTTCATGGAGAACATT 99
Query 269275 TCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTC 269313
|| || | || ||||| ||||||||||| |||||||||
Sbjct 98 TCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTC 60
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179074282092996
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