Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq8958 127 5e-24 seq4446 120 7e-22 seq3921 120 7e-22 >seq8958 Length=8154 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 243544 GACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAA 243603 || ||| |||| || | || ||||||||||| || |||||| |||||||| || Sbjct 904 GAGGCTCTTCCCTGTGGTCTGCTTGGCATGAACGCTACTCTCATGAAGCAGTACATTGAG 963 Query 243604 TTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAAC 243663 ||||| || |||||| | || |||| || || ||||||| || ||||| | | ||| Sbjct 964 TTCGTTGCAGACCGCCTCCTCGTCGCCCTCGGCAATGAGAAGGTTTACAAGGCAACCAAC 1023 Query 243664 CCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGT 243723 || |||| ||| |||||| |||||| ||| || || || ||||||||||| |||||| Sbjct 1024 CCATTTGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGT 1083 Query 243724 GTCAGTGATTATCAACGCCCTGGTGTGATG 243753 ||| |||||| || ||||||| ||| Sbjct 1084 GTCGCTGATTACCAGAAGGCTGGTGTCATG 1113 >seq4446 Length=444291 Score = 120 bits (132), Expect = 7e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627 ||||||||| || |||||| |||||||| || ||||| || |||||| | || || Sbjct 73332 GGCATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTC 73273 Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687 || || || ||||||| || ||||| | | ||||| |||| ||| |||||| |||| Sbjct 73272 GCCCTCGGCAATGAGAAGGTTTACAAGGCAACCAACCCATTTGACTTCATGGAGAACATT 73213 Query 243688 TCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGT 243747 || ||| || || || ||||||||||| ||||||||| |||||| || ||||| Sbjct 73212 TCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGT 73153 Query 243748 GTGATG 243753 || ||| Sbjct 73152 GTCATG 73147 >seq3921 Length=218 Score = 120 bits (132), Expect = 7e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627 ||||||||| || |||||| |||||||| || ||||| || |||||| | || || Sbjct 218 GGCATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTC 159 Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687 || || || ||||||| || ||||| | | ||||| |||| ||| |||||| |||| Sbjct 158 GCCCTCGGCAATGAGAAGGTTTACAAGGCAACCAACCCATTTGACTTCATGGAGAACATT 99 Query 243688 TCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGT 243747 || ||| || || || ||||||||||| ||||||||| |||||| || ||||| Sbjct 98 TCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGT 39 Query 243748 GTGATG 243753 || ||| Sbjct 38 GTCATG 33 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102337637391700