Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq8958 127 5e-24
seq4446 120 7e-22
seq3921 120 7e-22
>seq8958
Length=8154
Score = 127 bits (140), Expect = 5e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 243544 GACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAA 243603
|| ||| |||| || | || ||||||||||| || |||||| |||||||| ||
Sbjct 904 GAGGCTCTTCCCTGTGGTCTGCTTGGCATGAACGCTACTCTCATGAAGCAGTACATTGAG 963
Query 243604 TTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAAC 243663
||||| || |||||| | || |||| || || ||||||| || ||||| | | |||
Sbjct 964 TTCGTTGCAGACCGCCTCCTCGTCGCCCTCGGCAATGAGAAGGTTTACAAGGCAACCAAC 1023
Query 243664 CCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGT 243723
|| |||| ||| |||||| |||||| ||| || || || ||||||||||| ||||||
Sbjct 1024 CCATTTGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGT 1083
Query 243724 GTCAGTGATTATCAACGCCCTGGTGTGATG 243753
||| |||||| || ||||||| |||
Sbjct 1084 GTCGCTGATTACCAGAAGGCTGGTGTCATG 1113
>seq4446
Length=444291
Score = 120 bits (132), Expect = 7e-22
Identities = 138/186 (74%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627
||||||||| || |||||| |||||||| || ||||| || |||||| | || ||
Sbjct 73332 GGCATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTC 73273
Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687
|| || || ||||||| || ||||| | | ||||| |||| ||| |||||| ||||
Sbjct 73272 GCCCTCGGCAATGAGAAGGTTTACAAGGCAACCAACCCATTTGACTTCATGGAGAACATT 73213
Query 243688 TCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGT 243747
|| ||| || || || ||||||||||| ||||||||| |||||| || |||||
Sbjct 73212 TCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGT 73153
Query 243748 GTGATG 243753
|| |||
Sbjct 73152 GTCATG 73147
>seq3921
Length=218
Score = 120 bits (132), Expect = 7e-22
Identities = 138/186 (74%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627
||||||||| || |||||| |||||||| || ||||| || |||||| | || ||
Sbjct 218 GGCATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTC 159
Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687
|| || || ||||||| || ||||| | | ||||| |||| ||| |||||| ||||
Sbjct 158 GCCCTCGGCAATGAGAAGGTTTACAAGGCAACCAACCCATTTGACTTCATGGAGAACATT 99
Query 243688 TCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGT 243747
|| ||| || || || ||||||||||| ||||||||| |||||| || |||||
Sbjct 98 TCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGT 39
Query 243748 GTGATG 243753
|| |||
Sbjct 38 GTCATG 33
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102337637391700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |