Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq31830 273 2e-68 seq336 241 1e-58 seq31807 203 3e-47 seq37228 111 2e-19 >seq31830 Length=311768 Score = 273 bits (302), Expect = 2e-68 Identities = 1073/1667 (64%), Gaps = 28/1667 (2%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| |||||| || |||||| || || ||||||||| | || ||| Sbjct 111822 AACTACCAATACTTTGGCTTCAAGACCCTGGAGCGTTCCTATCTCCTCAAGCTTGACGGC 111763 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||||| ||||| || || | ||||| || || |||| || || || Sbjct 111762 AAGATTGCCGAGCGCCCGCAGCACATGATTATGCGTGTTTCCGTCGGTATCTGGGGAGAC 111703 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || | | ||| | | | | || |||| ||| | || || Sbjct 111702 AACGTTGAGCGTGTCATTGAGACGTACAACCTCATGTCCAGCAAATTCTTCACACACGCA 111643 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | || ||||| |||||||| || || || | | ||| |||| || || |||||| | Sbjct 111642 TCTCCTACCCTCTTCAACGCTGGCACGCCTCAGGCTCAGCTGTCGTCCTGCTTCCTGGTT 111583 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| ||| || || | ||||| ||||||| |||||| | || Sbjct 111582 GAC-ATGAAGGATGACAGCATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGAT 111524 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || || || || || || | | ||||| | | ||||||| || || || Sbjct 111523 CTCCAAGATGGCTGGTGGTATTGGTCTGAACGTCCATCGCATCCGTGCCACTGGCTCTTA 111464 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| ||| ||||| ||||| || |||||| || || ||||| || ||||||||||| Sbjct 111463 CATTGCCGGCACCAACGGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAA 111404 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | ||||||||||||| |||||||| || | | | || |||| || |||| || Sbjct 111403 CACGGCGCGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCT 111344 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 ||||| |||||||| || || | ||| | ||||| || |||||||||||||| || Sbjct 111343 TGAGCCATGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGA 111284 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | || | || |||||| || | ||| | || || || || ||||| || Sbjct 111283 GGAGGTTCGCGCTCGCGATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCG 111224 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 |||||||| ||| || ||||| ||| | || ||||| || || || || || | || Sbjct 111223 TGTCGAGAAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGA 111164 Query 94374 CGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA 94432 | | || | || ||||| | |||||| | ||||| | ||||||| | Sbjct 111163 CTGCTACGG-TGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCC 111105 Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492 | ||| || | || |||||| ||| | || | || | ||| ||||| | Sbjct 111104 GCAAGACCATCAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCG 111045 Query 94493 GTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 | | |||| ||| | | |||||| | ||| |||| |||| ||||||| || |||| Sbjct 111044 GCAACCCCTTCATGCTCTACAAGGATCACTG-CAACCGCAAGAGCAACCAGAAGAACCTT 110986 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || || ||||| || |||||||| |||||||||||||| | | || || ||| Sbjct 110985 GGTACCATTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAG 110926 Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACG 94671 |||| || || ||||||| ||| | |||| || | | ||| || |||| Sbjct 110925 GTTGCCGTCTGCAACCTGGCCTCTCTGGCCCTGCCCGCCTACGT------TGATTACA-- 110874 Query 94672 TCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGG--ATGGTCTTGA 94729 | || || | || || | || |||| | || | ||| | ||| || Sbjct 110873 ACAACGGCGT-GTATGACTTCAAGAAGCTCCACCAGGTCAC--TCAGGTCGTCGTCAGGA 110817 Query 94730 ACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACC 94789 |||| |||||| | |||||| |||| ||||||||| ||||| ||| ||| Sbjct 110816 ACCTCAACAGGATCATCGACGTGAACCATTACCCCGTCATCGAGGCTCGCAACAGCAACA 110757 Query 94790 TGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGC 94849 || ||||||||||| ||| | || |||||||| || || || || | | | | Sbjct 110756 TGCGCCATCGGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGCTTTCCTTGCTCTCC 110697 Query 94850 GTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTT 94909 | |||||| || ||| || || || | || | | || || || | ||| | Sbjct 110696 GCATGCCCTTTGAGTCTCCTGAGGCCAAGGAGCTCAACAAGCAGATCTTTGAGACCATCT 110637 Query 94910 ATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATC-GGACGGCGGGCCACACGAA 94968 | ||| ||| || || || ||| || | || ||| | || || || Sbjct 110636 ACCACGCTGCCCTG--ACCAT--GTCATGCAAGCTCGCTCAGGAGGAAGGCCCCTACTCC 110581 Query 94969 TCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAG 95028 | | || |||||| | ||||| || |||| | |||| | ||| || ||| Sbjct 110580 ACCTATGAGGGCTCGCCCGTCTCCCAGGGTATCCTTCAATACGACATGTGGAACGTCAAG 110521 Query 95029 CCCTCGGGTCTGTACGACTGGGAAGCTCT-ACGCGCTGATGTTATCAAACACGGTGTGAA 95087 || | | || | ||||||| | || | | || | | | ||||||| || Sbjct 110520 CCTACTGACCTTTGGGACTGGGCCGACCTGAAGAGC-CAGATCAAGCAACACGGCGTCCG 110462 Query 95088 AAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAA 95147 ||| || || ||||| ||||||||||||||| || ||||||||||||||||||| Sbjct 110461 TAACAGTCTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAA 110402 Query 95148 CGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATT 95207 ||||| ||||| || | ||| |||||| | ||| | | || ||||||||||| || || Sbjct 110401 CGAGTGCTTCGAGCCTTACACGTCCAACATCTACCAGCGTCGTGTGCTCGCCGGCGAGTT 110342 Query 95208 CCCCGTCATCAACAAGCACCTCCT-ACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACA 95266 || ||| ||||| || || | || | || | | ||||| | ||| ||| | Sbjct 110341 CCAGGTCGTCAACCCCTGGCTGCTCAAGGATCTTGTTGAC-ATGGGTCTTTGGTCTGATA 110283 Query 95267 AGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGG 95326 | ||||| | | | || || || ||| ||||||||||||| | || || | Sbjct 110282 GCATGAAGAATCGCATCATTGCCGAGAATGGTTCCATCCAGAACATCCCCAACATTCCCG 110223 Query 95327 AGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 ||| ||||| | || |||||||| || |||||||| | |||||| Sbjct 110222 CCGACGTCAAGTCCCTGTACAAGACTGTCTGGGAGATTTCTCAGCGC 110176 >seq336 Length=177044 Score = 241 bits (266), Expect = 1e-58 Identities = 738/1130 (65%), Gaps = 27/1130 (2%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| |||||| ||||||||| || || ||||||||| | || ||| Sbjct 110188 AACTACCAATACTTTGGCTTCAAGACTCTGGAGCGCTCTTATCTCCTCAAGCTTGACGGC 110247 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | | ||||||| ||||| || || | ||||| || || | || || || || Sbjct 110248 AAGATCGCCGAGCGCCCGCAGCACATGATTATGCGTGTGTCCGTTGGTATCTGGGGAGAC 110307 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || | | ||| | | | | || |||| |||| | || ||| Sbjct 110308 AACGTTGAGCGTGTCATTGAGACGTACAACCTCATGTCCAACAAATTCTTCACACACGCC 110367 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | || ||||| |||||||| || || || | | ||| |||| || || |||||| | Sbjct 110368 TCTCCTACCCTCTTCAACGCTGGCACGCCCCAGGCTCAGCTGTCGTCCTGCTTCCTGGTC 110427 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| || ||| || || | ||||| ||||||| |||||| | || Sbjct 110428 GAC-ATGAAGGATGATAGCATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGAT 110486 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || || || || || || | | ||||| | | ||||||| || || || Sbjct 110487 CTCCAAGATGGCTGGTGGTATTGGTCTGAACGTCCATCGCATCCGTGCCACTGGCTCTTA 110546 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| ||| ||||| ||||| || |||||| || || ||||| || ||||||||||| Sbjct 110547 CATTGCCGGCACCAACGGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAA 110606 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | ||||||||||||| |||||||| || | | | || |||| || |||| || Sbjct 110607 CACGGCGCGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCT 110666 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 ||||| |||||||| || || | ||| | ||||| || |||||||||||||| || Sbjct 110667 TGAGCCATGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGA 110726 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | || | || |||||| || | ||| | || || || || ||||| || Sbjct 110727 GGAGGTTCGCGCTCGCGATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCG 110786 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 |||||||| ||| || ||||| ||| | || ||||| || || || || || | || Sbjct 110787 TGTCGAGAAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGA 110846 Query 94374 CGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA 94432 | | || | || ||||| | |||||| | ||||| | ||||||| | Sbjct 110847 CTGCTACGG-TGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCC 110905 Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492 | ||| || | || |||||| ||| | || | || | ||| ||||| | Sbjct 110906 GCAAGACCATCAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCG 110965 Query 94493 GTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 | | |||| ||| | | |||||| | ||| |||| |||| ||||||| || |||| Sbjct 110966 GCAACCCCTTCATGCTCTACAAGGATCACTG-CAACCGCAAGAGCAACCAGAAGAACCTT 111024 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || || ||||| || |||||||| |||||||||||||| | | || || ||| Sbjct 111025 GGTACCATTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAG 111084 Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACG 94671 |||| || || ||||||| ||| | |||| || | | ||| || |||| Sbjct 111085 GTTGCCGTCTGCAACCTGGCCTCTCTGGCCCTGCCCGCCTACGT------TGATTACA-- 111136 Query 94672 TCTACTGCTTCGTTCGATCTGGAGGAGCT------TGTGAACTTCGCGGGAAGGATGGTC 94725 | || || | || ||| | || |||| |||| | | || | | ||| Sbjct 111137 ACAACGGCGT-GTACGACTTCAAGAAGCTCCACCAGGTGA----CTCAGGTCG--TCGTC 111189 Query 94726 TTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCA 94785 |||||| |||||| | |||||| |||| |||||||||| ||||| ||| Sbjct 111190 AGGAACCTCAACAGGATCATCGACGTGAACCACTACCCCGTCATCGAGGCTCGCAACAGC 111249 Query 94786 AACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGC 94835 ||| || ||||||||||| ||| | || |||||||| || || || || Sbjct 111250 AACATGCGCCATCGGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGC 111299 >seq31807 Length=5160 Score = 203 bits (224), Expect = 3e-47 Identities = 443/658 (67%), Gaps = 4/658 (1%) Strand=Plus/Minus Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038 || || | ||||| ||||||| |||||| | ||||| || || || || || || Sbjct 5151 GGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGT 5092 Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098 | | ||||| | | ||||||| || || ||||| ||| ||||| ||||| || Sbjct 5091 CTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCACCAACGGCACTTCA 5032 Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158 |||||| || || ||||| || |||||||||||| ||||||||||||| |||||||| Sbjct 5031 AACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGC 4972 Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218 || | | | || |||| || |||| || ||||| |||||||| || || Sbjct 4971 GGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTCTTC 4912 Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278 | ||| | ||||| || |||||||||||||| || || | || | || |||||| Sbjct 4911 GAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCTCGCGATCTCTTC 4852 Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGT 94338 || | ||| | || || || || ||||| || |||||||| ||| || ||||| | Sbjct 4851 CTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACTGGACT 4792 Query 94339 CTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCG-TTTTGAAGA 94397 || | || ||||| || || || || || | ||| | || | || ||||| | Sbjct 4791 CTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTACGG-TGACGAGTTTGAGGC 4733 Query 94398 CTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCT 94457 |||||| | ||||| | ||||||| | | ||| || | || |||||| Sbjct 4732 CTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAAGACCATCAAGGCGCAGAAGCT 4673 Query 94458 GTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGA 94517 ||| | || | || | ||| ||||| || | |||| ||| | | |||||| Sbjct 4672 TTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAGGA 4613 Query 94518 -CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGT 94576 | ||| |||| |||| ||||||| || |||| || || ||||| || |||| Sbjct 4612 TCACTG-CAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTCGCAGCTCCAACCTGT 4554 Query 94577 GCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTC 94634 |||| |||||||||||||| | | || || ||| |||| || || ||||||| ||| Sbjct 4553 GCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCGTCTGCAACCTGGCCTC 4496 >seq37228 Length=14314 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154 || || ||||| ||||||||||||||| || |||||||||||||||||||||||| Sbjct 14172 CTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGC 14231 Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTC 95214 ||||| || | ||| |||||| | ||| | | || ||||||||||| || |||| ||| Sbjct 14232 TTCGAGCCTTACACGTCCAACATCTACCAGCGTCGTGTGCTCGCCGGCGAGTTCCAGGTC 14291 Query 95215 ATCAAC 95220 ||||| Sbjct 14292 GTCAAC 14297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494485844176720