Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq31830 273 2e-68
seq336 241 1e-58
seq31807 203 3e-47
seq37228 111 2e-19
>seq31830
Length=311768
Score = 273 bits (302), Expect = 2e-68
Identities = 1073/1667 (64%), Gaps = 28/1667 (2%)
Strand=Plus/Minus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | ||||||| |||||| || |||||| || || ||||||||| | || |||
Sbjct 111822 AACTACCAATACTTTGGCTTCAAGACCCTGGAGCGTTCCTATCTCCTCAAGCTTGACGGC 111763
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| | || ||||||| ||||| || || | ||||| || || |||| || || ||
Sbjct 111762 AAGATTGCCGAGCGCCCGCAGCACATGATTATGCGTGTTTCCGTCGGTATCTGGGGAGAC 111703
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894
|| | | ||| | | | | || |||| ||| | || ||
Sbjct 111702 AACGTTGAGCGTGTCATTGAGACGTACAACCTCATGTCCAGCAAATTCTTCACACACGCA 111643
Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953
| || ||||| |||||||| || || || | | ||| |||| || || |||||| |
Sbjct 111642 TCTCCTACCCTCTTCAACGCTGGCACGCCTCAGGCTCAGCTGTCGTCCTGCTTCCTGGTT 111583
Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013
||| | |||| ||| ||| || || | ||||| ||||||| |||||| | ||
Sbjct 111582 GAC-ATGAAGGATGACAGCATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGAT 111524
Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073
||| || || || || || || | | ||||| | | ||||||| || || ||
Sbjct 111523 CTCCAAGATGGCTGGTGGTATTGGTCTGAACGTCCATCGCATCCGTGCCACTGGCTCTTA 111464
Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133
||| ||| ||||| ||||| || |||||| || || ||||| || |||||||||||
Sbjct 111463 CATTGCCGGCACCAACGGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAA 111404
Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193
| ||||||||||||| |||||||| || | | | || |||| || |||| ||
Sbjct 111403 CACGGCGCGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCT 111344
Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253
||||| |||||||| || || | ||| | ||||| || |||||||||||||| ||
Sbjct 111343 TGAGCCATGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGA 111284
Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313
|| | || | || |||||| || | ||| | || || || || ||||| ||
Sbjct 111283 GGAGGTTCGCGCTCGCGATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCG 111224
Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373
|||||||| ||| || ||||| ||| | || ||||| || || || || || | ||
Sbjct 111223 TGTCGAGAAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGA 111164
Query 94374 CGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA 94432
| | || | || ||||| | |||||| | ||||| | ||||||| |
Sbjct 111163 CTGCTACGG-TGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCC 111105
Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492
| ||| || | || |||||| ||| | || | || | ||| ||||| |
Sbjct 111104 GCAAGACCATCAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCG 111045
Query 94493 GTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551
| | |||| ||| | | |||||| | ||| |||| |||| ||||||| || ||||
Sbjct 111044 GCAACCCCTTCATGCTCTACAAGGATCACTG-CAACCGCAAGAGCAACCAGAAGAACCTT 110986
Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611
|| || ||||| || |||||||| |||||||||||||| | | || || |||
Sbjct 110985 GGTACCATTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAG 110926
Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACG 94671
|||| || || ||||||| ||| | |||| || | | ||| || ||||
Sbjct 110925 GTTGCCGTCTGCAACCTGGCCTCTCTGGCCCTGCCCGCCTACGT------TGATTACA-- 110874
Query 94672 TCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGG--ATGGTCTTGA 94729
| || || | || || | || |||| | || | ||| | ||| ||
Sbjct 110873 ACAACGGCGT-GTATGACTTCAAGAAGCTCCACCAGGTCAC--TCAGGTCGTCGTCAGGA 110817
Query 94730 ACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACC 94789
|||| |||||| | |||||| |||| ||||||||| ||||| ||| |||
Sbjct 110816 ACCTCAACAGGATCATCGACGTGAACCATTACCCCGTCATCGAGGCTCGCAACAGCAACA 110757
Query 94790 TGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGC 94849
|| ||||||||||| ||| | || |||||||| || || || || | | | |
Sbjct 110756 TGCGCCATCGGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGCTTTCCTTGCTCTCC 110697
Query 94850 GTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTT 94909
| |||||| || ||| || || || | || | | || || || | ||| |
Sbjct 110696 GCATGCCCTTTGAGTCTCCTGAGGCCAAGGAGCTCAACAAGCAGATCTTTGAGACCATCT 110637
Query 94910 ATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATC-GGACGGCGGGCCACACGAA 94968
| ||| ||| || || || ||| || | || ||| | || || ||
Sbjct 110636 ACCACGCTGCCCTG--ACCAT--GTCATGCAAGCTCGCTCAGGAGGAAGGCCCCTACTCC 110581
Query 94969 TCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAG 95028
| | || |||||| | ||||| || |||| | |||| | ||| || |||
Sbjct 110580 ACCTATGAGGGCTCGCCCGTCTCCCAGGGTATCCTTCAATACGACATGTGGAACGTCAAG 110521
Query 95029 CCCTCGGGTCTGTACGACTGGGAAGCTCT-ACGCGCTGATGTTATCAAACACGGTGTGAA 95087
|| | | || | ||||||| | || | | || | | | ||||||| ||
Sbjct 110520 CCTACTGACCTTTGGGACTGGGCCGACCTGAAGAGC-CAGATCAAGCAACACGGCGTCCG 110462
Query 95088 AAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAA 95147
||| || || ||||| ||||||||||||||| || |||||||||||||||||||
Sbjct 110461 TAACAGTCTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAA 110402
Query 95148 CGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATT 95207
||||| ||||| || | ||| |||||| | ||| | | || ||||||||||| || ||
Sbjct 110401 CGAGTGCTTCGAGCCTTACACGTCCAACATCTACCAGCGTCGTGTGCTCGCCGGCGAGTT 110342
Query 95208 CCCCGTCATCAACAAGCACCTCCT-ACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACA 95266
|| ||| ||||| || || | || | || | | ||||| | ||| ||| |
Sbjct 110341 CCAGGTCGTCAACCCCTGGCTGCTCAAGGATCTTGTTGAC-ATGGGTCTTTGGTCTGATA 110283
Query 95267 AGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGG 95326
| ||||| | | | || || || ||| ||||||||||||| | || || |
Sbjct 110282 GCATGAAGAATCGCATCATTGCCGAGAATGGTTCCATCCAGAACATCCCCAACATTCCCG 110223
Query 95327 AGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373
||| ||||| | || |||||||| || |||||||| | ||||||
Sbjct 110222 CCGACGTCAAGTCCCTGTACAAGACTGTCTGGGAGATTTCTCAGCGC 110176
>seq336
Length=177044
Score = 241 bits (266), Expect = 1e-58
Identities = 738/1130 (65%), Gaps = 27/1130 (2%)
Strand=Plus/Plus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | ||||||| |||||| ||||||||| || || ||||||||| | || |||
Sbjct 110188 AACTACCAATACTTTGGCTTCAAGACTCTGGAGCGCTCTTATCTCCTCAAGCTTGACGGC 110247
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| | | ||||||| ||||| || || | ||||| || || | || || || ||
Sbjct 110248 AAGATCGCCGAGCGCCCGCAGCACATGATTATGCGTGTGTCCGTTGGTATCTGGGGAGAC 110307
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894
|| | | ||| | | | | || |||| |||| | || |||
Sbjct 110308 AACGTTGAGCGTGTCATTGAGACGTACAACCTCATGTCCAACAAATTCTTCACACACGCC 110367
Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953
| || ||||| |||||||| || || || | | ||| |||| || || |||||| |
Sbjct 110368 TCTCCTACCCTCTTCAACGCTGGCACGCCCCAGGCTCAGCTGTCGTCCTGCTTCCTGGTC 110427
Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013
||| | |||| || ||| || || | ||||| ||||||| |||||| | ||
Sbjct 110428 GAC-ATGAAGGATGATAGCATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGAT 110486
Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073
||| || || || || || || | | ||||| | | ||||||| || || ||
Sbjct 110487 CTCCAAGATGGCTGGTGGTATTGGTCTGAACGTCCATCGCATCCGTGCCACTGGCTCTTA 110546
Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133
||| ||| ||||| ||||| || |||||| || || ||||| || |||||||||||
Sbjct 110547 CATTGCCGGCACCAACGGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAA 110606
Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193
| ||||||||||||| |||||||| || | | | || |||| || |||| ||
Sbjct 110607 CACGGCGCGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCT 110666
Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253
||||| |||||||| || || | ||| | ||||| || |||||||||||||| ||
Sbjct 110667 TGAGCCATGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGA 110726
Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313
|| | || | || |||||| || | ||| | || || || || ||||| ||
Sbjct 110727 GGAGGTTCGCGCTCGCGATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCG 110786
Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373
|||||||| ||| || ||||| ||| | || ||||| || || || || || | ||
Sbjct 110787 TGTCGAGAAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGA 110846
Query 94374 CGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA 94432
| | || | || ||||| | |||||| | ||||| | ||||||| |
Sbjct 110847 CTGCTACGG-TGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCC 110905
Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492
| ||| || | || |||||| ||| | || | || | ||| ||||| |
Sbjct 110906 GCAAGACCATCAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCG 110965
Query 94493 GTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551
| | |||| ||| | | |||||| | ||| |||| |||| ||||||| || ||||
Sbjct 110966 GCAACCCCTTCATGCTCTACAAGGATCACTG-CAACCGCAAGAGCAACCAGAAGAACCTT 111024
Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611
|| || ||||| || |||||||| |||||||||||||| | | || || |||
Sbjct 111025 GGTACCATTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAG 111084
Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACG 94671
|||| || || ||||||| ||| | |||| || | | ||| || ||||
Sbjct 111085 GTTGCCGTCTGCAACCTGGCCTCTCTGGCCCTGCCCGCCTACGT------TGATTACA-- 111136
Query 94672 TCTACTGCTTCGTTCGATCTGGAGGAGCT------TGTGAACTTCGCGGGAAGGATGGTC 94725
| || || | || ||| | || |||| |||| | | || | | |||
Sbjct 111137 ACAACGGCGT-GTACGACTTCAAGAAGCTCCACCAGGTGA----CTCAGGTCG--TCGTC 111189
Query 94726 TTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCA 94785
|||||| |||||| | |||||| |||| |||||||||| ||||| |||
Sbjct 111190 AGGAACCTCAACAGGATCATCGACGTGAACCACTACCCCGTCATCGAGGCTCGCAACAGC 111249
Query 94786 AACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGC 94835
||| || ||||||||||| ||| | || |||||||| || || || ||
Sbjct 111250 AACATGCGCCATCGGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGC 111299
>seq31807
Length=5160
Score = 203 bits (224), Expect = 3e-47
Identities = 443/658 (67%), Gaps = 4/658 (1%)
Strand=Plus/Minus
Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038
|| || | ||||| ||||||| |||||| | ||||| || || || || || ||
Sbjct 5151 GGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGT 5092
Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098
| | ||||| | | ||||||| || || ||||| ||| ||||| ||||| ||
Sbjct 5091 CTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCACCAACGGCACTTCA 5032
Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158
|||||| || || ||||| || |||||||||||| ||||||||||||| ||||||||
Sbjct 5031 AACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGC 4972
Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218
|| | | | || |||| || |||| || ||||| |||||||| || ||
Sbjct 4971 GGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTCTTC 4912
Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278
| ||| | ||||| || |||||||||||||| || || | || | || ||||||
Sbjct 4911 GAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCTCGCGATCTCTTC 4852
Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGT 94338
|| | ||| | || || || || ||||| || |||||||| ||| || ||||| |
Sbjct 4851 CTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACTGGACT 4792
Query 94339 CTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCG-TTTTGAAGA 94397
|| | || ||||| || || || || || | ||| | || | || ||||| |
Sbjct 4791 CTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTACGG-TGACGAGTTTGAGGC 4733
Query 94398 CTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCT 94457
|||||| | ||||| | ||||||| | | ||| || | || ||||||
Sbjct 4732 CTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAAGACCATCAAGGCGCAGAAGCT 4673
Query 94458 GTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGA 94517
||| | || | || | ||| ||||| || | |||| ||| | | ||||||
Sbjct 4672 TTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAGGA 4613
Query 94518 -CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGT 94576
| ||| |||| |||| ||||||| || |||| || || ||||| || ||||
Sbjct 4612 TCACTG-CAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTCGCAGCTCCAACCTGT 4554
Query 94577 GCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTC 94634
|||| |||||||||||||| | | || || ||| |||| || || ||||||| |||
Sbjct 4553 GCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCGTCTGCAACCTGGCCTC 4496
>seq37228
Length=14314
Score = 111 bits (122), Expect = 2e-19
Identities = 100/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154
|| || ||||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 14172 CTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGC 14231
Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTC 95214
||||| || | ||| |||||| | ||| | | || ||||||||||| || |||| |||
Sbjct 14232 TTCGAGCCTTACACGTCCAACATCTACCAGCGTCGTGTGCTCGCCGGCGAGTTCCAGGTC 14291
Query 95215 ATCAAC 95220
|||||
Sbjct 14292 GTCAAC 14297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494485844176720
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