Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq20113 129 6e-25 seq8335 125 7e-24 seq31830 107 2e-18 seq1514 107 2e-18 seq37228 96.9 3e-15 seq35245 91.5 1e-13 seq2224 86.0 6e-12 >seq20113 Length=64481 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| ||| || || ||| ||| || ||||| |||||| Sbjct 11152 GTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCA 11093 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||| || |||||||| || |||||||||||| || || |||| Sbjct 11092 GCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTG 11033 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| ||| |||||| | | ||| || |||| || | || |||||||||||||| Sbjct 11032 ACGTTGT-CGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGT 10974 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 10973 CTTGACAAAGATCTGCAT 10956 Score = 107 bits (118), Expect = 2e-18 Identities = 167/235 (71%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| |||||| || | || | |||||||| | || ||||| || || || ||||| Sbjct 11416 TACTG-TCCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTA 11358 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 || || |||||| ||| || ||||| || |||||| | |||| ||||| || || Sbjct 11357 GTCAGACAGGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTC 11298 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 |||||| || ||||||||||| ||| || ||||| |||| |||| ||||| | Sbjct 11297 GGGAGGGATACCCTCCTTGTCTTGGATCTTGGACTTGACGTTG-TCGATCGTGTCGGATG 11239 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| | || | || || ||||| || || || || || || ||||| Sbjct 11238 ATTCGACTTCCAATGTGATAGTCTTACCGGTGAGTGTCTTGACGAAGATTTGCAT 11184 >seq8335 Length=118861 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| ||| || || ||| ||| || ||||| |||||| Sbjct 14703 GTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTCAAGCTGCTTTCCA 14644 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||| || |||||||| || |||||||||||| || ||| |||| Sbjct 14643 GCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTG 14584 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| | | |||||| | | ||| || || | || | || ||||||||||| || Sbjct 14583 ACGTTGT-CAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGCGT 14525 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 14524 CTTGACAAAGATCTGCAT 14507 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/234 (70%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| |||||| || | || | |||||||| | || ||||| || || || ||||| Sbjct 14967 TACTG-TCCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTA 14909 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 || || ||||| || || ||||| || |||||| | |||| ||||| ||||| Sbjct 14908 GTCAGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATC 14849 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACT 127059 |||||| |||||||||||||| ||| || ||| | | |||| ||||| | Sbjct 14848 GGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTCACATTGTCGATCGTGTCGGATGA 14789 Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| | || | || || ||||| || || || || || || ||||| Sbjct 14788 TTCGACTTCCAATGTGATAGTCTTACCGGTGAGCGTCTTGACGAAGATTTGCAT 14735 >seq31830 Length=311768 Score = 107 bits (118), Expect = 2e-18 Identities = 979/1562 (63%), Gaps = 60/1562 (4%) Strand=Plus/Plus Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093 || ||| || || |||||| || | ||||||| ||||| |||||||||||||| || Sbjct 110299 CATGTCAACAAGATCCTTGAGCAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGCAC 110358 Query 146094 GCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTG 146153 || | | | || | |||| ||| | |||||||| |||||||||| || || ||||| Sbjct 110359 ACGACGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGGATCTG 110418 Query 146154 CGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTG 146213 || || | || || |||||| |||||| || | | ||| | ||||||||| | Sbjct 110419 CGAGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGACGCCGTGTTGCTT 110478 Query 146214 AATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTT 146273 |||| | || | || ||| | || || | || || || | || || | | Sbjct 110479 GATCTGGCTCTTCAGGTCGGCCCAGTCCC---AAAGGTCAGTAGGCTTGACGTTCCACAT 110535 Query 146274 GTCGTAATGCATAGTGCCGCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTC 146333 |||||| || | | || || | | ||| ||| || | || || || || Sbjct 110536 GTCGTATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATAGGTGGAGTAGGGGCCTTC 110595 Query 146334 GATCTTGGCCAGTTCGCA-GCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCA 146392 || || || | ||| | | | ||| || | ||| |||||||| |||| Sbjct 110596 CTCCTGAGCGAGCTTGCATGACATGGT-CAGGGCAGCGTGGTAGATGGTCTCAAAGATCT 110654 Query 146393 TGTAGTTGACGCTCC-TGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGGCG 146451 | ||||| ||||| ||||||| || |||| || |||| | || || Sbjct 110655 GCTTGTTGA-GCTCCTTGGCCTCAGGAGACTCAAAGGGCATGCGGAGAGCAAGGAAAGCA 110713 Query 146452 TCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCG 146511 || || | ||||| | || | |||| ||| || || | |||| ||||| ||| Sbjct 110714 TCAGCCAAGCCCTGGACACCAAGGCCAATGGGCCGATGGCGCATGTTGCTGTTGCGAGC- 110772 Query 146512 CCCGCAG-TGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTT 146570 | || | ||| || ||||| |||||||||| ||||||| || | ||||| | | Sbjct 110773 CTCGATGACGGGGTAATGGTTCACGTCGATGATCCTGTTGAGGTTCCTGACGACGACCTG 110832 Query 146571 CGTCAAACGATTCAGCAGGACATAGTCAAA-----TGTTTTAGT-TTTAACGTTGACGCA 146624 || | | | ||| ||||| | ||| | || | ||||| | || Sbjct 110833 AGTGACCTGGTGGAGCTTCTTGAAGTCATACACGCCGTTGTTGTAATCAACGTAGGCGGG 110892 Query 146625 CTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTC-CTTGTCGCAATACT 146683 | | ||| | |||||||| ||| || |||||| ||| || || || | |||| Sbjct 110893 C------AGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCG-AGTACT 110945 Query 146684 GCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAA 146743 |||||||| | ||| |||||| || ||| | || | || || ||||| || Sbjct 110946 CGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCT-- 111003 Query 146744 ACTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCT 146800 ||| ||||||| | ||||||||||||||| | || ||||| ||| | | || Sbjct 111004 -CTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCT 111062 Query 146801 CGACGATGAATCTAAACAAATC-TCTG-GCCTTTACTTGTCTTTCGTACAGT-TTATTCT 146857 ||| || | | | |||| | |||| ||||| | | ||||| || | | | || Sbjct 111063 CGAGGACG--GCGTACCAAAGCTTCTGCGCCTTGA-TGGTCTTGCGGCCCTTGCCAGCCT 111119 Query 146858 TTTCGTATTTCTCGTACAATATTTCAAAACTAG-AACCGTACTCGTCGAGGAGGCCGGGA 146916 | ||||| ||||||||||| || ||||| | |||||| ||| ||||| || Sbjct 111120 TCTCGTACTTCTCGTACAAGGCCTC-AAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGG 111178 Query 146917 TACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAA 146976 ||| ||||| || | || | ||| || |||| || || || | ||| || | | Sbjct 111179 CACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGA 111238 Query 146977 TCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTG 147036 ||||| ||||| | | |||| | | |||||||| | ||||| ||| ||| Sbjct 111239 TCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCGTGGTTC 111298 Query 147037 CGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGT 147096 | | || |||| ||| | | || | ||||| ||||| | ||| ||| | Sbjct 111299 TTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAA 111358 Query 147097 GCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGT 147153 ||||| ||| || |||||||| || |||| |||| || |||| |||||||| || Sbjct 111359 GCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCGA 111418 Query 147154 AACATGGACACGAGGCCGCCGGATTT---TGTGGTGCCG---TTGT-------ATTGAGC 147200 | ||||| | || |||| || | |||||||| ||| | || || Sbjct 111419 AGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTG-GC 111477 Query 147201 GCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGA-CT 147259 | || || || ||| |||| || | ||| || ||| || || |||| || | | Sbjct 111478 ACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGT 111537 Query 147260 CGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACG 147319 | || | ||| | |||||| || || |||||||| ||||| ||| |||||| || | Sbjct 111538 CTTG-AGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCAGG 111596 Query 147320 AACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGA--A 147377 | ||| || | || |||||| || || || || || ||||| |||| | Sbjct 111597 ACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGTGTGAAGA 111656 Query 147378 CGTGCCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAAT 147437 | | || ||| | | ||||| |||||| | | | ||||| || || || Sbjct 111657 ATTTGCTGGA--CATGAGGTTGTACGTCTCAATGACACGCTCAACGTTGTCTCCCCAGAT 111714 Query 147438 GGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTT 147497 | | || || ||||| | ||||||||| || || || |||||| | | | | || Sbjct 111715 ACCGACGGAAACACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTGCCGTCAAGCTT 111774 Query 147498 TAATAGATATCCATTGGTCAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGTT 147557 | ||||| | ||| || ||||| |||||||| | ||||| | |||| | || Sbjct 111775 GAGGAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCACGGTC 111834 Query 147558 GT 147559 || Sbjct 111835 GT 111836 >seq1514 Length=10590 Score = 107 bits (118), Expect = 2e-18 Identities = 128/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 126920 GACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCG 126979 ||||| || || || ||||| ||| || ||||| ||| || ||||| || || ||| Sbjct 5777 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCG 5718 Query 126980 TAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-G 127038 |||||| ||||| || |||||||| ||||||||||||||| ||| ||| ||| | | Sbjct 5717 AAGATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACG 5658 Query 127039 TTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 ||| |||| |||||||| |||||| || | ||| | || |||||||| Sbjct 5657 TTG-TCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 5608 >seq37228 Length=14314 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 ||||||| ||||| |||||||||||||| || || | | | || | |||| ||| | | Sbjct 14298 GGTTGACGACCTGGAACTCGCCGGCGAGCACACGACGCTGGTAGATGTTGGACGTGTAAG 14239 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 ||||||| |||||||||| || || ||||||| || | || || |||||| ||||| Sbjct 14238 GCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCA 14179 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTGT 146208 | || | | ||| | ||||||||| Sbjct 14178 CGAGAAGACTGTTACGGACGCCGTGT 14153 >seq35245 Length=420 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| ||| || ||||| || ||| Sbjct 142 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCA 201 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| ||||| || ||||| || ||||||||||||||| ||| || |||| Sbjct 202 GCN---ATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 258 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || ||||| || || || Sbjct 259 ACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 318 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 319 TTGACGAAGATCTGCATG 336 >seq2224 Length=467227 Score = 86.0 bits (94), Expect = 6e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| || ||||| ||| || ||||| || || ||| | ||| Sbjct 112107 TTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATC 112048 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | ||||| || || || || ||||||||||||||| ||| ||| ||||| | ||| Sbjct 112047 AGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 111988 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | |||||| | ||| || || | ||| | || ||||| ||||| || || || ||| Sbjct 111987 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAA 111928 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| || ||||| ||| || ||||| || || ||| | ||| Sbjct 102758 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 102699 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | ||||| || ||||| || ||||||||||||||| ||| ||| ||||| | || Sbjct 102698 AGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCA 102639 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 102638 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGT 102589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475272666603680