Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq20113 129 6e-25
seq8335 125 7e-24
seq31830 107 2e-18
seq1514 107 2e-18
seq37228 96.9 3e-15
seq35245 91.5 1e-13
seq2224 86.0 6e-12
>seq20113
Length=64481
Score = 129 bits (142), Expect = 6e-25
Identities = 149/198 (75%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| ||||| ||| || || ||| ||| || ||||| ||||||
Sbjct 11152 GTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCA 11093
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||| | ||||| || |||||||| || |||||||||||| || || ||||
Sbjct 11092 GCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTG 11033
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| ||||| ||| |||||| | | ||| || |||| || | || ||||||||||||||
Sbjct 11032 ACGTTGT-CGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGT 10974
Query 127096 TTTTACAAAAATCTGCAT 127113
|| ||||| ||||||||
Sbjct 10973 CTTGACAAAGATCTGCAT 10956
Score = 107 bits (118), Expect = 2e-18
Identities = 167/235 (71%), Gaps = 3/235 (1%)
Strand=Plus/Minus
Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939
||||| |||||| || | || | |||||||| | || ||||| || || || |||||
Sbjct 11416 TACTG-TCCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTA 11358
Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999
|| || |||||| ||| || ||||| || |||||| | |||| ||||| || ||
Sbjct 11357 GTCAGACAGGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTC 11298
Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058
|||||| || ||||||||||| ||| || ||||| |||| |||| ||||| |
Sbjct 11297 GGGAGGGATACCCTCCTTGTCTTGGATCTTGGACTTGACGTTG-TCGATCGTGTCGGATG 11239
Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||||||| | || | || || ||||| || || || || || || |||||
Sbjct 11238 ATTCGACTTCCAATGTGATAGTCTTACCGGTGAGTGTCTTGACGAAGATTTGCAT 11184
>seq8335
Length=118861
Score = 125 bits (138), Expect = 7e-24
Identities = 148/198 (75%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| ||||| ||| || || ||| ||| || ||||| ||||||
Sbjct 14703 GTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTCAAGCTGCTTTCCA 14644
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | ||||| || |||||||| || |||||||||||| || ||| ||||
Sbjct 14643 GCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTG 14584
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| ||||| | | |||||| | | ||| || || | || | || ||||||||||| ||
Sbjct 14583 ACGTTGT-CAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGCGT 14525
Query 127096 TTTTACAAAAATCTGCAT 127113
|| ||||| ||||||||
Sbjct 14524 CTTGACAAAGATCTGCAT 14507
Score = 98.7 bits (108), Expect = 9e-16
Identities = 163/234 (70%), Gaps = 1/234 (0%)
Strand=Plus/Minus
Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939
||||| |||||| || | || | |||||||| | || ||||| || || || |||||
Sbjct 14967 TACTG-TCCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTA 14909
Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999
|| || ||||| || || ||||| || |||||| | |||| ||||| |||||
Sbjct 14908 GTCAGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATC 14849
Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACT 127059
|||||| |||||||||||||| ||| || ||| | | |||| ||||| |
Sbjct 14848 GGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTCACATTGTCGATCGTGTCGGATGA 14789
Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||||||| | || | || || ||||| || || || || || || |||||
Sbjct 14788 TTCGACTTCCAATGTGATAGTCTTACCGGTGAGCGTCTTGACGAAGATTTGCAT 14735
>seq31830
Length=311768
Score = 107 bits (118), Expect = 2e-18
Identities = 979/1562 (63%), Gaps = 60/1562 (4%)
Strand=Plus/Plus
Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093
|| ||| || || |||||| || | ||||||| ||||| |||||||||||||| ||
Sbjct 110299 CATGTCAACAAGATCCTTGAGCAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGCAC 110358
Query 146094 GCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTG 146153
|| | | | || | |||| ||| | |||||||| |||||||||| || || |||||
Sbjct 110359 ACGACGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGGATCTG 110418
Query 146154 CGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTG 146213
|| || | || || |||||| |||||| || | | ||| | ||||||||| |
Sbjct 110419 CGAGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGACGCCGTGTTGCTT 110478
Query 146214 AATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTT 146273
|||| | || | || ||| | || || | || || || | || || | |
Sbjct 110479 GATCTGGCTCTTCAGGTCGGCCCAGTCCC---AAAGGTCAGTAGGCTTGACGTTCCACAT 110535
Query 146274 GTCGTAATGCATAGTGCCGCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTC 146333
|||||| || | | || || | | ||| ||| || | || || || ||
Sbjct 110536 GTCGTATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATAGGTGGAGTAGGGGCCTTC 110595
Query 146334 GATCTTGGCCAGTTCGCA-GCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCA 146392
|| || || | ||| | | | ||| || | ||| |||||||| ||||
Sbjct 110596 CTCCTGAGCGAGCTTGCATGACATGGT-CAGGGCAGCGTGGTAGATGGTCTCAAAGATCT 110654
Query 146393 TGTAGTTGACGCTCC-TGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGGCG 146451
| ||||| ||||| ||||||| || |||| || |||| | || ||
Sbjct 110655 GCTTGTTGA-GCTCCTTGGCCTCAGGAGACTCAAAGGGCATGCGGAGAGCAAGGAAAGCA 110713
Query 146452 TCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCG 146511
|| || | ||||| | || | |||| ||| || || | |||| ||||| |||
Sbjct 110714 TCAGCCAAGCCCTGGACACCAAGGCCAATGGGCCGATGGCGCATGTTGCTGTTGCGAGC- 110772
Query 146512 CCCGCAG-TGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTT 146570
| || | ||| || ||||| |||||||||| ||||||| || | ||||| | |
Sbjct 110773 CTCGATGACGGGGTAATGGTTCACGTCGATGATCCTGTTGAGGTTCCTGACGACGACCTG 110832
Query 146571 CGTCAAACGATTCAGCAGGACATAGTCAAA-----TGTTTTAGT-TTTAACGTTGACGCA 146624
|| | | | ||| ||||| | ||| | || | ||||| | ||
Sbjct 110833 AGTGACCTGGTGGAGCTTCTTGAAGTCATACACGCCGTTGTTGTAATCAACGTAGGCGGG 110892
Query 146625 CTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTC-CTTGTCGCAATACT 146683
| | ||| | |||||||| ||| || |||||| ||| || || || | ||||
Sbjct 110893 C------AGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCG-AGTACT 110945
Query 146684 GCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAA 146743
|||||||| | ||| |||||| || ||| | || | || || ||||| ||
Sbjct 110946 CGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCT-- 111003
Query 146744 ACTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCT 146800
||| ||||||| | ||||||||||||||| | || ||||| ||| | | ||
Sbjct 111004 -CTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCT 111062
Query 146801 CGACGATGAATCTAAACAAATC-TCTG-GCCTTTACTTGTCTTTCGTACAGT-TTATTCT 146857
||| || | | | |||| | |||| ||||| | | ||||| || | | | ||
Sbjct 111063 CGAGGACG--GCGTACCAAAGCTTCTGCGCCTTGA-TGGTCTTGCGGCCCTTGCCAGCCT 111119
Query 146858 TTTCGTATTTCTCGTACAATATTTCAAAACTAG-AACCGTACTCGTCGAGGAGGCCGGGA 146916
| ||||| ||||||||||| || ||||| | |||||| ||| ||||| ||
Sbjct 111120 TCTCGTACTTCTCGTACAAGGCCTC-AAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGG 111178
Query 146917 TACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAA 146976
||| ||||| || | || | ||| || |||| || || || | ||| || | |
Sbjct 111179 CACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGA 111238
Query 146977 TCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTG 147036
||||| ||||| | | |||| | | |||||||| | ||||| ||| |||
Sbjct 111239 TCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCGTGGTTC 111298
Query 147037 CGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGT 147096
| | || |||| ||| | | || | ||||| ||||| | ||| ||| |
Sbjct 111299 TTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAA 111358
Query 147097 GCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGT 147153
||||| ||| || |||||||| || |||| |||| || |||| |||||||| ||
Sbjct 111359 GCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCGA 111418
Query 147154 AACATGGACACGAGGCCGCCGGATTT---TGTGGTGCCG---TTGT-------ATTGAGC 147200
| ||||| | || |||| || | |||||||| ||| | || ||
Sbjct 111419 AGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTG-GC 111477
Query 147201 GCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGA-CT 147259
| || || || ||| |||| || | ||| || ||| || || |||| || | |
Sbjct 111478 ACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGT 111537
Query 147260 CGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACG 147319
| || | ||| | |||||| || || |||||||| ||||| ||| |||||| || |
Sbjct 111538 CTTG-AGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCAGG 111596
Query 147320 AACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGA--A 147377
| ||| || | || |||||| || || || || || ||||| |||| |
Sbjct 111597 ACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGTGTGAAGA 111656
Query 147378 CGTGCCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAAT 147437
| | || ||| | | ||||| |||||| | | | ||||| || || ||
Sbjct 111657 ATTTGCTGGA--CATGAGGTTGTACGTCTCAATGACACGCTCAACGTTGTCTCCCCAGAT 111714
Query 147438 GGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTT 147497
| | || || ||||| | ||||||||| || || || |||||| | | | | ||
Sbjct 111715 ACCGACGGAAACACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTGCCGTCAAGCTT 111774
Query 147498 TAATAGATATCCATTGGTCAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGTT 147557
| ||||| | ||| || ||||| |||||||| | ||||| | |||| | ||
Sbjct 111775 GAGGAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCACGGTC 111834
Query 147558 GT 147559
||
Sbjct 111835 GT 111836
>seq1514
Length=10590
Score = 107 bits (118), Expect = 2e-18
Identities = 128/171 (75%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 126920 GACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCG 126979
||||| || || || ||||| ||| || ||||| ||| || ||||| || || |||
Sbjct 5777 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCG 5718
Query 126980 TAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-G 127038
|||||| ||||| || |||||||| ||||||||||||||| ||| ||| ||| | |
Sbjct 5717 AAGATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACG 5658
Query 127039 TTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
||| |||| |||||||| |||||| || | ||| | || ||||||||
Sbjct 5657 TTG-TCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 5608
>seq37228
Length=14314
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122
||||||| ||||| |||||||||||||| || || | | | || | |||| ||| | |
Sbjct 14298 GGTTGACGACCTGGAACTCGCCGGCGAGCACACGACGCTGGTAGATGTTGGACGTGTAAG 14239
Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182
||||||| |||||||||| || || ||||||| || | || || |||||| |||||
Sbjct 14238 GCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCA 14179
Query 146183 CCAGCAAAGAGTTTCTCACGCCGTGT 146208
| || | | ||| | |||||||||
Sbjct 14178 CGAGAAGACTGTTACGGACGCCGTGT 14153
>seq35245
Length=420
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 3/198 (2%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| | ||||| ||| || ||||| || |||
Sbjct 142 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCA 201
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||| ||||| || ||||| || ||||||||||||||| ||| || ||||
Sbjct 202 GCN---ATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 258
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||| | ||| || || | ||| | || ||||| || || ||
Sbjct 259 ACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 318
Query 127097 TTTACAAAAATCTGCATG 127114
|| || || |||||||||
Sbjct 319 TTGACGAAGATCTGCATG 336
>seq2224
Length=467227
Score = 86.0 bits (94), Expect = 6e-12
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| || ||||| ||| || ||||| || || ||| | |||
Sbjct 112107 TTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATC 112048
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| ||||| || || || || ||||||||||||||| ||| ||| ||||| | |||
Sbjct 112047 AGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 111988
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| |||||| | ||| || || | ||| | || ||||| ||||| || || || |||
Sbjct 111987 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAA 111928
Score = 82.4 bits (90), Expect = 7e-11
Identities = 120/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| || ||||| ||| || ||||| || || ||| | |||
Sbjct 102758 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 102699
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| ||||| || ||||| || ||||||||||||||| ||| ||| ||||| | ||
Sbjct 102698 AGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCA 102639
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||||| | ||| || || | ||| | || ||||| ||||| ||
Sbjct 102638 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGT 102589
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475272666603680
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