Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq20113 91.5 1e-13 seq8335 86.0 6e-12 >seq20113 Length=64481 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || || || || || || ||||| || || || || ||| ||| | | || ||| | Sbjct 11164 ACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCG--GACAGAGTACGACCATCCT 11107 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | || ||||| || | || | || || ||||| || ||||| || || || || | Sbjct 11106 CAAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCT 11047 Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 |||| || |||| || | || | ||||||||||||||| || |||||||| | || Sbjct 11046 GAATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTC 10988 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| ||||| || ||||| || ||||| Sbjct 10987 TTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 10956 >seq8335 Length=118861 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || || || ||||| || || || || ||| Sbjct 14736 ATACCACCACGGAGGCGGAGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCG 14677 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || ||||| ||| | || | || || ||||| || Sbjct 14676 GACAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGA 14617 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || ||||| || |||| || | || | ||||||||||||||| Sbjct 14616 GGAATACCCTCCTTGTCCTGAATCTTCGACTTGA-CGTTGTCAATGGTGTCGGAAGACTC 14558 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || |||||||| || || || ||||| || ||||| Sbjct 14557 CACCTCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 14507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451786340164720