Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq31830 246 4e-60 seq336 158 1e-33 seq31807 118 1e-21 seq37228 113 6e-20 seq7069 98.7 1e-15 >seq31830 Length=311768 Score = 246 bits (272), Expect = 4e-60 Identities = 916/1422 (64%), Gaps = 49/1422 (3%) Strand=Plus/Plus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935 ||||| || ||||| || | | | |||||||||| |||||| ||||| |||||||| Sbjct 110342 AACTCGCCGGCGAGCACACGACGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCG 110401 Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 ||||| || | ||| || | || ||| ||||||||||| |||| |||||| ||||| Sbjct 110402 TTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTA 110461 Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTG 116053 |||| || | | || | ||| ||| || ||||||| | | | || | | Sbjct 110462 CGGACGCCGTGTTGCTTGATCTGGCTCTTCAGGTCGGCCCAGTCCCAAAGGTCAG--TAG 110519 Query 116054 TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 116113 || | | |||||| || | || |||||||| ||||| | ||||| |||||| | | Sbjct 110520 GCTTGACGTTCCACATGTCGTATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATAGG 110579 Query 116114 TCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG--AGGGCTGCGTGATA 116171 | || ||||| || ||| || | | | | | | | | ||||| ||||| || Sbjct 110580 TGGAGTAGGGGCCTTCCTCCTGAGCGAGCTTGCA--TGACATGGTCAGGGCAGCGTGGTA 110637 Query 116172 CATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACG 116231 || |||||||| || | || | |||||||||| || ||||| | | || Sbjct 110638 GATGGTCTCAAAGATCTGCTTGTTGAGCTCCTTGGCCTCAGGAGACTCAAAGGGCATGCG 110697 Query 116232 GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 116291 | || || |||| || | || |||||||| |||||||| || ||||| | ||| Sbjct 110698 GAGAGCAAGGAAAGCATCAGCCAAGCCCTGGACACCAAGGCCAATGGGCCGATGGCGCAT 110757 Query 116292 ATTAGACTTTCGAGCGGTCTCCA---CGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348 || || ||||| ||| | |||| ||| ||| ||||| | ||| || || Sbjct 110758 GTTGCTGTTGCGAGC---CTCGATGACGGGGTAATGGTTCACGTCGATGATCCTGTTGAG 110814 Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 116408 || || ||| |||| |||| | || ||||| | | | ||| | || | | Sbjct 110815 GTTCCTGACGACGACCTGAGTGACCTGGTGGAGCTTCTTGAAGTCATACACGCCGTTGTT 110874 Query 116409 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 116468 | || || || || ||||| | || ||||| || || || | |||||| Sbjct 110875 GTAATCAACGTAGGCGGGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGG 110934 Query 116469 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 116528 | | |||||| | ||| || || |||| || || || |||||| || | |||||| Sbjct 110935 TGCCGAGTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTT 110994 Query 116529 TTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGT 116588 || || ||| ||| || ||||||||||||||| | || | || ||||| || Sbjct 110995 CTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGT 111054 Query 116589 TTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCC 116647 || | || ||| | || | ||| | | || ||| || | ||| ||| || | Sbjct 111055 CTGAGCCTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGA----TGGTCTTG---CGGC 111107 Query 116648 CCT------CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCT 116700 ||| ||| ||||||||| ||| | |||||||||||| ||||| ||| || Sbjct 111108 CCTTGCCAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGT-AGCAGTCA 111166 Query 116701 GAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGC 116760 | || || || || | || || | ||||| ||| | || || ||| || ||| Sbjct 111167 GCAAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGC 111226 Query 116761 TTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCA 116820 ||||||||||| || |||||||| | ||| ||||||||| ||| |||| | || || Sbjct 111227 TTCATGAAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCC 111286 Query 116821 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 116880 | || || || || | || | || || | || ||| |||||||| || || ||| Sbjct 111287 TTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGG 111346 Query 116881 TACACCGCGATTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTT 116934 || | || | | || | |||| || |||||| || || | |||||| Sbjct 111347 TAGATGGCAAAAGCGCC---GGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTG 111403 Query 116935 GCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATA 116994 ||| || ||||||||||| || |||| || | || ||| || || || ||| Sbjct 111404 TTGTTGAAGACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATG 111463 Query 116995 CGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 117054 ||| |||| | || |||| || || ||||||||| || ||| ||| ||| Sbjct 111464 TAAGAGCCAGTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAG 111523 Query 117055 ATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCG 117114 || || || | |||| || ||||||| || || || |||| |||| | | Sbjct 111524 ATCATGGCACAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCA 111583 Query 117115 ATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTC 117174 | ||||||||| ||||| || | | || || ||||||||||||||||| || | Sbjct 111584 ACCAGGAAGCAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGAT 111643 Query 117175 GCGTGGATGAACA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAA--- 117229 ||||| |||| | | || |||||| | ||| ||||| | |||| || Sbjct 111644 GCGTGTGTGAAGAATTTGCT--GGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT 111701 Query 117230 TGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGT 117271 ||||| ||| | ||||||| || || ||||||| ||||| Sbjct 111702 TGTCTCCCCAG---ATACCGACGGAAACACGCATAATCATGT 111740 >seq336 Length=177044 Score = 158 bits (174), Expect = 1e-33 Identities = 527/814 (65%), Gaps = 31/814 (4%) Strand=Plus/Minus Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 |||||| | ||| || || |||| || || || |||||| || | |||||| || || Sbjct 111069 GTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTT 111010 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 ||| ||| || ||||||||||||||| | || | || ||||| || || | Sbjct 111009 GCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGC 110950 Query 116595 CTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT--- 116650 || ||| | || | ||| | | || ||| || | ||| ||| || |||| Sbjct 110949 CTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGA----TGGTCTTG---CGGCCCTTGC 110897 Query 116651 ---CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGC 116706 ||| ||||||||| ||| | |||||||||||| ||||| ||| || | || Sbjct 110896 CAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGT-AGCAGTCAGCAAGG 110838 Query 116707 CCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 116766 || || || | || || | ||||| ||| | || || ||| || ||||||||| Sbjct 110837 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 110778 Query 116767 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 116826 ||||| || |||||||| | ||| ||||||||| ||| |||| | || || | || Sbjct 110777 AAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCG 110718 Query 116827 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 116886 || || || | || | || || | || ||| |||||||| || || ||||| | Sbjct 110717 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 110658 Query 116887 GCGATTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTA 116940 || | | || | |||| || |||||| || || | |||||| ||| Sbjct 110657 GCAAAAGCGCC---GGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTG 110601 Query 116941 AATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGAC 117000 || ||||||||||| || |||| || | || ||| || || || ||| ||| Sbjct 110600 AAGACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAG 110541 Query 117001 TTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGT 117060 |||| | || |||| || || ||||||||| || ||| ||| ||||| Sbjct 110540 CCAGTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATG 110481 Query 117061 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 117120 || || | |||| || ||||||| || || || ||| |||| | ||| ||| Sbjct 110480 GCACAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTATCATCCTTCATGTCGACCAGG 110421 Query 117121 AAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGG 117180 |||||| ||||| || | | || || ||||||||||||||||| || | ||||| Sbjct 110420 AAGCAGGACGACAGCTGAGCCTGGGGCGTGCCAGCGTTGAAGAGGGTAGGAGAGGCGTGT 110361 Query 117181 ATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAA---TGTCTTCC 117237 |||| | | |||||| | ||| ||||| | |||| || ||||| || Sbjct 110360 GTGAAGAATTTGTTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGTTGTCTCCC 110301 Query 117238 CCGTGAATACCGATTGAGACCCGCATAAACATGT 117271 | | ||||| | || || ||||||| ||||| Sbjct 110300 CAG---ATACCAACGGACACACGCATAATCATGT 110270 >seq31807 Length=5160 Score = 118 bits (130), Expect = 1e-21 Identities = 410/635 (65%), Gaps = 25/635 (4%) Strand=Plus/Plus Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 |||||| | ||| || || |||| || || || |||||| || | |||||| || || Sbjct 4534 GTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTT 4593 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 ||| ||| || ||||||||||||||| | || | || ||||| || || | Sbjct 4594 GCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGC 4653 Query 116595 CTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT--- 116650 || ||| | || | ||| | | || ||| || | ||| ||| || |||| Sbjct 4654 CTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGA----TGGTCTTG---CGGCCCTTGC 4706 Query 116651 ---CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGC 116706 ||| ||||||||| ||| | |||||||||||| ||||| ||| || | || Sbjct 4707 CAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGT-AGCAGTCAGCAAGG 4765 Query 116707 CCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 116766 || || || | || || | ||||| ||| | || || ||| || ||||||||| Sbjct 4766 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 4825 Query 116767 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 116826 ||||| || |||||||| | ||| ||||||||| ||| |||| | || || | || Sbjct 4826 AAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCG 4885 Query 116827 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 116886 || || || | || | || || | || ||| |||||||| || || ||||| | Sbjct 4886 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 4945 Query 116887 GCGATTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTA 116940 || | | || | |||| || |||||| || || | |||||| ||| Sbjct 4946 GCAAAAGCGCC---GGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTG 5002 Query 116941 AATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGAC 117000 || ||||||||||| || |||| || | || ||| || || || ||| ||| Sbjct 5003 AAGACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAG 5062 Query 117001 TTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGT 117060 |||| | || |||| || || ||||||||| || ||| ||| ||||| Sbjct 5063 CCAGTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATG 5122 Query 117061 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGAT 117095 || || | |||| || ||||||| || || || Sbjct 5123 GCACAGGTCTTGAGGGTGTCGTAGATACCTTCAAT 5157 >seq37228 Length=14314 Score = 113 bits (124), Expect = 6e-20 Identities = 281/423 (66%), Gaps = 8/423 (2%) Strand=Plus/Minus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935 ||||| || ||||| || | | | |||||||||| |||||| ||||| |||||||| Sbjct 14284 AACTCGCCGGCGAGCACACGACGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCG 14225 Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 ||||| || | ||| || | || ||| ||||||||||| |||| |||||| ||||| Sbjct 14224 TTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTA 14165 Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGT--CGTAGTTGAGCTTTG 116053 |||| || | | || | ||| ||| || |||||| | || | || | | Sbjct 14164 CGGACGCCGTGTTGCTTGATCTGGCTCTTCAGGTCGGCCCAGTCCCAAAGGTCAG--TAG 14107 Query 116054 TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 116113 || | | |||||| || | || |||||||| ||||| | ||||| |||||| | | Sbjct 14106 GCTTGACGTTCCACATGTCGTATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATAGG 14047 Query 116114 TCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG--AGGGCTGCGTGATA 116171 | || ||||| || ||| || | | | | | | | | ||||| ||||| || Sbjct 14046 TGGAGTAGGGGCCTTCCTCCTGAGCGAGCTTGCA--TGACATGGTCAGGGCAGCGTGGTA 13989 Query 116172 CATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACG 116231 || |||||||| || | || | |||||||||| || ||||| | | || Sbjct 13988 GATGGTCTCAAAGATCTGCTTGTTGAGCTCCTTGGCCTCAGGAGACTCAAAGGGCATGCG 13929 Query 116232 GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 116291 | || || |||| || | || |||||||| |||||||| || ||||| | ||| Sbjct 13928 GAGAGCAAGGAAAGCATCAGCCAAGCCCTGGACACCAAGGCCAATGGGCCGATGGCGCAT 13869 Query 116292 ATT 116294 || Sbjct 13868 GTT 13866 >seq7069 Length=10009 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| |||||||||||||| |||||||| || || ||||| ||| || |||||||| || Sbjct 214 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGGCCAGGCATGAGGCC 155 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || | ||| ||||||||| ||||| || Sbjct 154 TCGCTTCTTGAGCCAGAAGATTGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACGAC 95 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGG 127679 |||||| |||| || || |||||||| Sbjct 94 CGCGAAAGCAACGAGGCGGGTGGCAAAGG 66 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613212854583120