Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq31830 246 4e-60
seq336 158 1e-33
seq31807 118 1e-21
seq37228 113 6e-20
seq7069 98.7 1e-15
>seq31830
Length=311768
Score = 246 bits (272), Expect = 4e-60
Identities = 916/1422 (64%), Gaps = 49/1422 (3%)
Strand=Plus/Plus
Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935
||||| || ||||| || | | | |||||||||| |||||| ||||| ||||||||
Sbjct 110342 AACTCGCCGGCGAGCACACGACGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCG 110401
Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995
||||| || | ||| || | || ||| ||||||||||| |||| |||||| |||||
Sbjct 110402 TTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTA 110461
Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTG 116053
|||| || | | || | ||| ||| || ||||||| | | | || | |
Sbjct 110462 CGGACGCCGTGTTGCTTGATCTGGCTCTTCAGGTCGGCCCAGTCCCAAAGGTCAG--TAG 110519
Query 116054 TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 116113
|| | | |||||| || | || |||||||| ||||| | ||||| |||||| | |
Sbjct 110520 GCTTGACGTTCCACATGTCGTATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATAGG 110579
Query 116114 TCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG--AGGGCTGCGTGATA 116171
| || ||||| || ||| || | | | | | | | | ||||| ||||| ||
Sbjct 110580 TGGAGTAGGGGCCTTCCTCCTGAGCGAGCTTGCA--TGACATGGTCAGGGCAGCGTGGTA 110637
Query 116172 CATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACG 116231
|| |||||||| || | || | |||||||||| || ||||| | | ||
Sbjct 110638 GATGGTCTCAAAGATCTGCTTGTTGAGCTCCTTGGCCTCAGGAGACTCAAAGGGCATGCG 110697
Query 116232 GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 116291
| || || |||| || | || |||||||| |||||||| || ||||| | |||
Sbjct 110698 GAGAGCAAGGAAAGCATCAGCCAAGCCCTGGACACCAAGGCCAATGGGCCGATGGCGCAT 110757
Query 116292 ATTAGACTTTCGAGCGGTCTCCA---CGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348
|| || ||||| ||| | |||| ||| ||| ||||| | ||| || ||
Sbjct 110758 GTTGCTGTTGCGAGC---CTCGATGACGGGGTAATGGTTCACGTCGATGATCCTGTTGAG 110814
Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 116408
|| || ||| |||| |||| | || ||||| | | | ||| | || | |
Sbjct 110815 GTTCCTGACGACGACCTGAGTGACCTGGTGGAGCTTCTTGAAGTCATACACGCCGTTGTT 110874
Query 116409 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 116468
| || || || || ||||| | || ||||| || || || | ||||||
Sbjct 110875 GTAATCAACGTAGGCGGGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGG 110934
Query 116469 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 116528
| | |||||| | ||| || || |||| || || || |||||| || | ||||||
Sbjct 110935 TGCCGAGTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTT 110994
Query 116529 TTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGT 116588
|| || ||| ||| || ||||||||||||||| | || | || ||||| ||
Sbjct 110995 CTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGT 111054
Query 116589 TTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCC 116647
|| | || ||| | || | ||| | | || ||| || | ||| ||| || |
Sbjct 111055 CTGAGCCTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGA----TGGTCTTG---CGGC 111107
Query 116648 CCT------CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCT 116700
||| ||| ||||||||| ||| | |||||||||||| ||||| ||| ||
Sbjct 111108 CCTTGCCAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGT-AGCAGTCA 111166
Query 116701 GAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGC 116760
| || || || || | || || | ||||| ||| | || || ||| || |||
Sbjct 111167 GCAAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGC 111226
Query 116761 TTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCA 116820
||||||||||| || |||||||| | ||| ||||||||| ||| |||| | || ||
Sbjct 111227 TTCATGAAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCC 111286
Query 116821 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 116880
| || || || || | || | || || | || ||| |||||||| || || |||
Sbjct 111287 TTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGG 111346
Query 116881 TACACCGCGATTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTT 116934
|| | || | | || | |||| || |||||| || || | ||||||
Sbjct 111347 TAGATGGCAAAAGCGCC---GGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTG 111403
Query 116935 GCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATA 116994
||| || ||||||||||| || |||| || | || ||| || || || |||
Sbjct 111404 TTGTTGAAGACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATG 111463
Query 116995 CGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 117054
||| |||| | || |||| || || ||||||||| || ||| ||| |||
Sbjct 111464 TAAGAGCCAGTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAG 111523
Query 117055 ATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCG 117114
|| || || | |||| || ||||||| || || || |||| |||| | |
Sbjct 111524 ATCATGGCACAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCA 111583
Query 117115 ATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTC 117174
| ||||||||| ||||| || | | || || ||||||||||||||||| || |
Sbjct 111584 ACCAGGAAGCAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGAT 111643
Query 117175 GCGTGGATGAACA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAA--- 117229
||||| |||| | | || |||||| | ||| ||||| | |||| ||
Sbjct 111644 GCGTGTGTGAAGAATTTGCT--GGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT 111701
Query 117230 TGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGT 117271
||||| ||| | ||||||| || || ||||||| |||||
Sbjct 111702 TGTCTCCCCAG---ATACCGACGGAAACACGCATAATCATGT 111740
>seq336
Length=177044
Score = 158 bits (174), Expect = 1e-33
Identities = 527/814 (65%), Gaps = 31/814 (4%)
Strand=Plus/Minus
Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534
|||||| | ||| || || |||| || || || |||||| || | |||||| || ||
Sbjct 111069 GTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTT 111010
Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594
||| ||| || ||||||||||||||| | || | || ||||| || || |
Sbjct 111009 GCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGC 110950
Query 116595 CTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT--- 116650
|| ||| | || | ||| | | || ||| || | ||| ||| || ||||
Sbjct 110949 CTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGA----TGGTCTTG---CGGCCCTTGC 110897
Query 116651 ---CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGC 116706
||| ||||||||| ||| | |||||||||||| ||||| ||| || | ||
Sbjct 110896 CAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGT-AGCAGTCAGCAAGG 110838
Query 116707 CCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 116766
|| || || | || || | ||||| ||| | || || ||| || |||||||||
Sbjct 110837 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 110778
Query 116767 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 116826
||||| || |||||||| | ||| ||||||||| ||| |||| | || || | ||
Sbjct 110777 AAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCG 110718
Query 116827 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 116886
|| || || | || | || || | || ||| |||||||| || || ||||| |
Sbjct 110717 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 110658
Query 116887 GCGATTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTA 116940
|| | | || | |||| || |||||| || || | |||||| |||
Sbjct 110657 GCAAAAGCGCC---GGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTG 110601
Query 116941 AATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGAC 117000
|| ||||||||||| || |||| || | || ||| || || || ||| |||
Sbjct 110600 AAGACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAG 110541
Query 117001 TTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGT 117060
|||| | || |||| || || ||||||||| || ||| ||| |||||
Sbjct 110540 CCAGTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATG 110481
Query 117061 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 117120
|| || | |||| || ||||||| || || || ||| |||| | ||| |||
Sbjct 110480 GCACAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTATCATCCTTCATGTCGACCAGG 110421
Query 117121 AAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGG 117180
|||||| ||||| || | | || || ||||||||||||||||| || | |||||
Sbjct 110420 AAGCAGGACGACAGCTGAGCCTGGGGCGTGCCAGCGTTGAAGAGGGTAGGAGAGGCGTGT 110361
Query 117181 ATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAA---TGTCTTCC 117237
|||| | | |||||| | ||| ||||| | |||| || ||||| ||
Sbjct 110360 GTGAAGAATTTGTTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGTTGTCTCCC 110301
Query 117238 CCGTGAATACCGATTGAGACCCGCATAAACATGT 117271
| | ||||| | || || ||||||| |||||
Sbjct 110300 CAG---ATACCAACGGACACACGCATAATCATGT 110270
>seq31807
Length=5160
Score = 118 bits (130), Expect = 1e-21
Identities = 410/635 (65%), Gaps = 25/635 (4%)
Strand=Plus/Plus
Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534
|||||| | ||| || || |||| || || || |||||| || | |||||| || ||
Sbjct 4534 GTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTT 4593
Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594
||| ||| || ||||||||||||||| | || | || ||||| || || |
Sbjct 4594 GCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGC 4653
Query 116595 CTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT--- 116650
|| ||| | || | ||| | | || ||| || | ||| ||| || ||||
Sbjct 4654 CTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGA----TGGTCTTG---CGGCCCTTGC 4706
Query 116651 ---CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGC 116706
||| ||||||||| ||| | |||||||||||| ||||| ||| || | ||
Sbjct 4707 CAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGT-AGCAGTCAGCAAGG 4765
Query 116707 CCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 116766
|| || || | || || | ||||| ||| | || || ||| || |||||||||
Sbjct 4766 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 4825
Query 116767 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 116826
||||| || |||||||| | ||| ||||||||| ||| |||| | || || | ||
Sbjct 4826 AAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCG 4885
Query 116827 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 116886
|| || || | || | || || | || ||| |||||||| || || ||||| |
Sbjct 4886 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 4945
Query 116887 GCGATTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTA 116940
|| | | || | |||| || |||||| || || | |||||| |||
Sbjct 4946 GCAAAAGCGCC---GGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTG 5002
Query 116941 AATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGAC 117000
|| ||||||||||| || |||| || | || ||| || || || ||| |||
Sbjct 5003 AAGACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAG 5062
Query 117001 TTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGT 117060
|||| | || |||| || || ||||||||| || ||| ||| |||||
Sbjct 5063 CCAGTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATG 5122
Query 117061 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGAT 117095
|| || | |||| || ||||||| || || ||
Sbjct 5123 GCACAGGTCTTGAGGGTGTCGTAGATACCTTCAAT 5157
>seq37228
Length=14314
Score = 113 bits (124), Expect = 6e-20
Identities = 281/423 (66%), Gaps = 8/423 (2%)
Strand=Plus/Minus
Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935
||||| || ||||| || | | | |||||||||| |||||| ||||| ||||||||
Sbjct 14284 AACTCGCCGGCGAGCACACGACGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCG 14225
Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995
||||| || | ||| || | || ||| ||||||||||| |||| |||||| |||||
Sbjct 14224 TTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTA 14165
Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGT--CGTAGTTGAGCTTTG 116053
|||| || | | || | ||| ||| || |||||| | || | || | |
Sbjct 14164 CGGACGCCGTGTTGCTTGATCTGGCTCTTCAGGTCGGCCCAGTCCCAAAGGTCAG--TAG 14107
Query 116054 TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 116113
|| | | |||||| || | || |||||||| ||||| | ||||| |||||| | |
Sbjct 14106 GCTTGACGTTCCACATGTCGTATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATAGG 14047
Query 116114 TCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG--AGGGCTGCGTGATA 116171
| || ||||| || ||| || | | | | | | | | ||||| ||||| ||
Sbjct 14046 TGGAGTAGGGGCCTTCCTCCTGAGCGAGCTTGCA--TGACATGGTCAGGGCAGCGTGGTA 13989
Query 116172 CATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACG 116231
|| |||||||| || | || | |||||||||| || ||||| | | ||
Sbjct 13988 GATGGTCTCAAAGATCTGCTTGTTGAGCTCCTTGGCCTCAGGAGACTCAAAGGGCATGCG 13929
Query 116232 GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 116291
| || || |||| || | || |||||||| |||||||| || ||||| | |||
Sbjct 13928 GAGAGCAAGGAAAGCATCAGCCAAGCCCTGGACACCAAGGCCAATGGGCCGATGGCGCAT 13869
Query 116292 ATT 116294
||
Sbjct 13868 GTT 13866
>seq7069
Length=10009
Score = 98.7 bits (108), Expect = 1e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
||| |||||||||||||| |||||||| || || ||||| ||| || |||||||| ||
Sbjct 214 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGGCCAGGCATGAGGCC 155
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||| | |||||| || | || | ||| ||||||||| ||||| ||
Sbjct 154 TCGCTTCTTGAGCCAGAAGATTGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACGAC 95
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGG 127679
|||||| |||| || || ||||||||
Sbjct 94 CGCGAAAGCAACGAGGCGGGTGGCAAAGG 66
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613212854583120
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