Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq31830 178 2e-39 seq37228 127 3e-24 seq336 107 3e-18 >seq31830 Length=311768 Score = 178 bits (196), Expect = 2e-39 Identities = 451/678 (67%), Gaps = 6/678 (1%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 ||| || || ||||| ||||| | | | |||| | | | | ||| ||||||||||| Sbjct 109981 CTTATCAACAGTGAATTGAATAGGGGCAGCAGCAGCCTGGGTGCGCAGGTAGTACATGCC 110040 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 |||||| ||||| || ||| ||| | ||||||| | | |||| || | | || Sbjct 110041 GGTCTTGAGGCCAAGCTTCCAGCCGGCGAAGTGCATGCTCGTGATCTTGCCCATGGTAGG 110100 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 ||| |||||||||||||| |||||| ||||||||||| ||| || ||||| || | Sbjct 110101 GTCCTTCATGTGAATGTTCAAGGACTGGGACTGGTCGATGAA-GGCACCACGATCGGCAG 110159 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 |||| | | || ||| ||| ||||||||||| || |||||| ||| | || || Sbjct 110160 CCATCTGCACAACGGTGCGCTGAGAAATCTCCCAGACAGTCTTGTACAGGGACTTGACGT 110219 Query 204078 GTTGAGGCACATCTTCCC-ACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135 | || | || || | || ||| || || || || ||||| || | | || | Sbjct 110220 CG-GCGGGA-ATGTTGGGGATGTTCTGGATGGAACCATTCTCGGCAATGATGCGATTCTT 110277 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | | || ||| | |||| | || ||| | ||| |||||||| || Sbjct 110278 CATGCTATCAGACCAAAGACCCATGTCAACAAGATCCTTGAGCAGCCAGGGGTTGACGAC 110337 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || |||| ||||| | || | | | |||| ||| | || ||||| Sbjct 110338 CTGGAACTCGCCGGCGAGCACACGACGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCA 110397 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||| | ||||| | ||| ||||||||||||||||| |||| ||| || Sbjct 110398 CTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACT 110457 Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375 ||| || || |||| || | || | || |||||| || |||||| | || | Sbjct 110458 GTTACGGACGCCGTGTTGCTTGATCTGGCTCTTCAGGTCGGCCCAGTCCCAAAGGTCAGT 110517 Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTA 204435 || || ||| |||||||||| | |||| ||| || || ||| || ||||| || Sbjct 110518 AGGCTTGACGTTCCACATGTCGTATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATA 110577 Query 204436 CGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTA 204495 || | || || ||||| | || |||||||| || || || ||| | ||| Sbjct 110578 GGTGGAGTAGGGGCCTTCCTCCTGAGCGAGCTTGCATGACATGGTCAGGGCAGCGTGGTA 110637 Query 204496 CATGGTCTCAAAGATCTG 204513 ||||||||||||||||| Sbjct 110638 GATGGTCTCAAAGATCTG 110655 >seq37228 Length=14314 Score = 127 bits (140), Expect = 3e-24 Identities = 226/330 (68%), Gaps = 0/330 (0%) Strand=Plus/Minus Query 204184 GGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAA 204243 |||||||| || ||| || || |||| ||||| | || | | | |||| ||| | Sbjct 14300 GGGGTTGACGACCTGGAACTCGCCGGCGAGCACACGACGCTGGTAGATGTTGGACGTGTA 14241 Query 204244 TGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGC 204303 || ||||| |||||||||||| | ||||| | ||| ||||||||||||||||| || Sbjct 14240 AGGCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGC 14181 Query 204304 CAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC 204363 || ||| || ||| || || |||| || | || | || |||||| || |||||| Sbjct 14180 CACGAGAAGACTGTTACGGACGCCGTGTTGCTTGATCTGGCTCTTCAGGTCGGCCCAGTC 14121 Query 204364 GTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGG 204423 | || | || || ||| |||||||||| | |||| ||| || || ||| || Sbjct 14120 CCAAAGGTCAGTAGGCTTGACGTTCCACATGTCGTATTGAAGGATACCCTGGGAGACGGG 14061 Query 204424 GCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCAT 204483 ||||| || || | || || ||||| | || |||||||| || || || Sbjct 14060 CGAGCCCTCATAGGTGGAGTAGGGGCCTTCCTCCTGAGCGAGCTTGCATGACATGGTCAG 14001 Query 204484 GGCGTGATAGTACATGGTCTCAAAGATCTG 204513 ||| | ||| ||||||||||||||||| Sbjct 14000 GGCAGCGTGGTAGATGGTCTCAAAGATCTG 13971 >seq336 Length=177044 Score = 107 bits (118), Expect = 3e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 ||| || || ||||| || || | | | | |||| | | | | ||| ||||||||||| Sbjct 113008 CTTATCAACGGTGAATTGGATAGGGGCCGCAGCAGCCTGGGTGCGCAGGTAGTACATGCC 112949 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 |||||| ||||| || ||| ||| | ||||||| | | |||| || | | || Sbjct 112948 GGTCTTGAGGCCAAGCTTCCAGCCGGCGAAGTGCATGCTCGTGATCTTGCCCATGGTAGG 112889 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 ||| |||||||||||||| ||||| ||||||||||| ||| || ||||| || | Sbjct 112888 GTCCTTCATGTGAATGTTCAAGGACTGAGACTGGTCGATGAA-GGCACCACGATCGGCAG 112830 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 |||| | | | ||| ||| ||||||||||| || |||||| ||| Sbjct 112829 CCATCTGAACGACGGTGCGCTGAGAAATCTCCCAGACAGTCTTGTACA 112782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794773704413920