Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq31830 178 2e-39
seq37228 127 3e-24
seq336 107 3e-18
>seq31830
Length=311768
Score = 178 bits (196), Expect = 2e-39
Identities = 451/678 (67%), Gaps = 6/678 (1%)
Strand=Plus/Plus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898
||| || || ||||| ||||| | | | |||| | | | | ||| |||||||||||
Sbjct 109981 CTTATCAACAGTGAATTGAATAGGGGCAGCAGCAGCCTGGGTGCGCAGGTAGTACATGCC 110040
Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958
|||||| ||||| || ||| ||| | ||||||| | | |||| || | | ||
Sbjct 110041 GGTCTTGAGGCCAAGCTTCCAGCCGGCGAAGTGCATGCTCGTGATCTTGCCCATGGTAGG 110100
Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017
||| |||||||||||||| |||||| ||||||||||| ||| || ||||| || |
Sbjct 110101 GTCCTTCATGTGAATGTTCAAGGACTGGGACTGGTCGATGAA-GGCACCACGATCGGCAG 110159
Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077
|||| | | || ||| ||| ||||||||||| || |||||| ||| | || ||
Sbjct 110160 CCATCTGCACAACGGTGCGCTGAGAAATCTCCCAGACAGTCTTGTACAGGGACTTGACGT 110219
Query 204078 GTTGAGGCACATCTTCCC-ACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135
| || | || || | || ||| || || || || ||||| || | | || |
Sbjct 110220 CG-GCGGGA-ATGTTGGGGATGTTCTGGATGGAACCATTCTCGGCAATGATGCGATTCTT 110277
Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195
| | || ||| | |||| | || ||| | ||| |||||||| ||
Sbjct 110278 CATGCTATCAGACCAAAGACCCATGTCAACAAGATCCTTGAGCAGCCAGGGGTTGACGAC 110337
Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255
||| || || |||| ||||| | || | | | |||| ||| | || |||||
Sbjct 110338 CTGGAACTCGCCGGCGAGCACACGACGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCA 110397
Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315
|||||||||||| | ||||| | ||| ||||||||||||||||| |||| ||| ||
Sbjct 110398 CTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACT 110457
Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375
||| || || |||| || | || | || |||||| || |||||| | || |
Sbjct 110458 GTTACGGACGCCGTGTTGCTTGATCTGGCTCTTCAGGTCGGCCCAGTCCCAAAGGTCAGT 110517
Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTA 204435
|| || ||| |||||||||| | |||| ||| || || ||| || ||||| ||
Sbjct 110518 AGGCTTGACGTTCCACATGTCGTATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATA 110577
Query 204436 CGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTA 204495
|| | || || ||||| | || |||||||| || || || ||| | |||
Sbjct 110578 GGTGGAGTAGGGGCCTTCCTCCTGAGCGAGCTTGCATGACATGGTCAGGGCAGCGTGGTA 110637
Query 204496 CATGGTCTCAAAGATCTG 204513
|||||||||||||||||
Sbjct 110638 GATGGTCTCAAAGATCTG 110655
>seq37228
Length=14314
Score = 127 bits (140), Expect = 3e-24
Identities = 226/330 (68%), Gaps = 0/330 (0%)
Strand=Plus/Minus
Query 204184 GGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAA 204243
|||||||| || ||| || || |||| ||||| | || | | | |||| ||| |
Sbjct 14300 GGGGTTGACGACCTGGAACTCGCCGGCGAGCACACGACGCTGGTAGATGTTGGACGTGTA 14241
Query 204244 TGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGC 204303
|| ||||| |||||||||||| | ||||| | ||| ||||||||||||||||| ||
Sbjct 14240 AGGCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGC 14181
Query 204304 CAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC 204363
|| ||| || ||| || || |||| || | || | || |||||| || ||||||
Sbjct 14180 CACGAGAAGACTGTTACGGACGCCGTGTTGCTTGATCTGGCTCTTCAGGTCGGCCCAGTC 14121
Query 204364 GTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGG 204423
| || | || || ||| |||||||||| | |||| ||| || || ||| ||
Sbjct 14120 CCAAAGGTCAGTAGGCTTGACGTTCCACATGTCGTATTGAAGGATACCCTGGGAGACGGG 14061
Query 204424 GCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCAT 204483
||||| || || | || || ||||| | || |||||||| || || ||
Sbjct 14060 CGAGCCCTCATAGGTGGAGTAGGGGCCTTCCTCCTGAGCGAGCTTGCATGACATGGTCAG 14001
Query 204484 GGCGTGATAGTACATGGTCTCAAAGATCTG 204513
||| | ||| |||||||||||||||||
Sbjct 14000 GGCAGCGTGGTAGATGGTCTCAAAGATCTG 13971
>seq336
Length=177044
Score = 107 bits (118), Expect = 3e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898
||| || || ||||| || || | | | | |||| | | | | ||| |||||||||||
Sbjct 113008 CTTATCAACGGTGAATTGGATAGGGGCCGCAGCAGCCTGGGTGCGCAGGTAGTACATGCC 112949
Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958
|||||| ||||| || ||| ||| | ||||||| | | |||| || | | ||
Sbjct 112948 GGTCTTGAGGCCAAGCTTCCAGCCGGCGAAGTGCATGCTCGTGATCTTGCCCATGGTAGG 112889
Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017
||| |||||||||||||| ||||| ||||||||||| ||| || ||||| || |
Sbjct 112888 GTCCTTCATGTGAATGTTCAAGGACTGAGACTGGTCGATGAA-GGCACCACGATCGGCAG 112830
Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065
|||| | | | ||| ||| ||||||||||| || |||||| |||
Sbjct 112829 CCATCTGAACGACGGTGCGCTGAGAAATCTCCCAGACAGTCTTGTACA 112782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794773704413920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |