Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq20113 141 2e-28
seq8335 138 3e-27
seq1514 98.7 2e-15
>seq20113
Length=64481
Score = 141 bits (156), Expect = 2e-28
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || ||||| |||||||||||||| || | ||||||||| | || |||
Sbjct 11176 CGAAGGCGGAGAACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTA 11117
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || ||||||||||| || |||||||| ||||| ||||| ||| ||| ||
Sbjct 11116 CGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCC 11057
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||| ||| |||| |||||| | | || || || |
Sbjct 11056 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGA 10997
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || ||||| || ||||| || ||
Sbjct 10996 GTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTG 10959
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | || || ||||||||||| |||| ||||||||||| || || | |||||
Sbjct 11395 AGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCC 11336
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || ||||| || || ||||| ||||| ||| || || || ||
Sbjct 11335 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCT 11276
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| ||||| | || ||| || ||||| ||||| |||
Sbjct 11275 TGGATCTTGGACTTGACGTTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTC 11216
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || || || |||||
Sbjct 11215 TTACCGGTGAGTGTCTTGACGAAGATTTG 11187
>seq8335
Length=118861
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||| ||||| |||||||| || | ||||||||| | |||||| | |||||
Sbjct 14718 AGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCC 14659
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| ||||||||||| ||||||||||||||||| ||||| ||| ||| || || |||
Sbjct 14658 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC 14599
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| ||| || | |||||| | | || || || | ||||| |||
Sbjct 14598 TGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTC 14539
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || || ||||| || ||
Sbjct 14538 TTGCCGGTCAGCGTCTTGACAAAGATCTG 14510
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | || || ||||||||||| |||| ||||||||||| || || | || ||
Sbjct 14946 AGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCC 14887
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || ||||| || || ||||| || || ||| ||| || || ||
Sbjct 14886 TCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCT 14827
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| |||||| |||| ||||| | || ||| || ||||| ||||| |||
Sbjct 14826 TGGATCTTGGACTTCACATTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTC 14767
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || || || |||||
Sbjct 14766 TTACCGGTGAGCGTCTTGACGAAGATTTG 14738
Score = 84.2 bits (92), Expect = 5e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994
|| |||||||| ||||||||| | || ||||| | |||||| |||| |||||| | |||
Sbjct 14633 CTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGTACTTTGTCCGACTACAACATTCAG 14692
Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018
|| ||||| ||||||||||| |||
Sbjct 14693 AAGGAGTCCACTCTTCACCTCGTT 14716
>seq1514
Length=10590
Score = 98.7 bits (108), Expect = 2e-15
Identities = 125/172 (73%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 199436 GACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCG 199495
|||||||| |||| ||||||||| | || || | ||||| || |||||||| ||||||
Sbjct 5777 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCG 5718
Query 199496 AAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACG 199555
||||| || ||||| ||||| ||| || || || ||||| ||||| ||| |||
Sbjct 5717 AAGATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACG 5658
Query 199556 GATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGA 199607
|||| |||||| | | || || || | ||||| ||||| || ||||
Sbjct 5657 TTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGA 5606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178341842461594
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |