Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2224 143 3e-29 seq20113 138 1e-27 seq8335 134 2e-26 seq35245 131 2e-25 seq1514 118 1e-21 seq31326 98.7 1e-15 seq31299 93.3 5e-14 >seq2224 Length=467227 Score = 143 bits (158), Expect = 3e-29 Identities = 135/172 (78%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| |||||||| | || |||||||||||||||||||| | Sbjct 102760 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAA 102701 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||| ||||||| || | || |||||||||| ||||||| ||||| | Sbjct 102700 TCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 102641 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | | |||||| || ||||| || | |||||||| ||||||||||| || Sbjct 102640 CAATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGT 102589 Score = 132 bits (146), Expect = 5e-26 Identities = 138/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| | |||||| | || || ||||||||||||||||| | Sbjct 112109 CCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAA 112050 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||| ||||| | || | || |||||||||| ||||||| ||||| | Sbjct 112049 TCAGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 111990 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | |||||| || ||||| || | |||||||| ||||||||||| || || || | Sbjct 111989 CGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 111930 Query 46584 A 46584 | Sbjct 111929 A 111929 >seq20113 Length=64481 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| || |||||| ||||| |||||||| || || ||||| | || ||| Sbjct 11392 ACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCG 11333 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| |||| |||||| ||||||| || | | ||||||||| | Sbjct 11332 AGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCTTGG 11273 Query 46505 ATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | ||||||| ||||| || |||| ||||| || || Sbjct 11272 ATCTTGGACTTGA-CGTTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTT 11214 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||||||||| Sbjct 11213 ACCGGTGAGTGTCTTGACGAAGATTTGCAT 11184 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| ||||| || | || || |||||||| || || || Sbjct 11147 CTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAA 11088 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||| ||||||| || | | |||||||||| ||||| ||||| ||| Sbjct 11087 GATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGA-CGT 11029 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | |||||||| ||||| ||||| || || | Sbjct 11028 TGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGA 10969 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 10968 CAAAGATCTGCAT 10956 >seq8335 Length=118861 Score = 134 bits (148), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| || |||||| ||||| |||||||| || || ||||| |||| || Sbjct 14943 ACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCA 14884 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| |||| |||||| || |||| || | || ||||||||| | Sbjct 14883 AGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCTTGG 14824 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | | | | ||||||| ||||| || |||| ||||| || || Sbjct 14823 ATCTTGGACTTCACATTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTA 14764 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || ||||| || || ||||||||||| Sbjct 14763 CCGGTGAGCGTCTTGACGAAGATTTGCAT 14735 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| | ||| || | || || |||||||| || ||||| Sbjct 14698 CTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAA 14639 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| ||||||| || | | |||||||||| |||||| ||||| ||| Sbjct 14638 GATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGA-CGT 14580 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || ||||| || | |||||||| ||||| |||||||| || | Sbjct 14579 TGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGA 14520 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 14519 CAAAGATCTGCAT 14507 >seq35245 Length=420 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| || |||||| ||||| ||||||||||| |||||||| | || || Sbjct 129 CACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTC 188 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| || |||| |||||| ||||||| || | || |||||||||| Sbjct 189 AAGCTGCTTGCCAGC---NATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTG 245 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| | | | |||||| ||| ||||| || | ||||| || || Sbjct 246 GATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTT 305 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || || || || ||||| ||||| Sbjct 306 GCCCGTGAGGGTCTTGACGAAGATCTGCAT 335 >seq1514 Length=10590 Score = 118 bits (130), Expect = 1e-21 Identities = 129/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || || ||||||||||||||||| Sbjct 5775 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 5716 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||| ||||||| || | || |||||||||| ||||||| ||| | ||| Sbjct 5715 GATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTT-AACGT 5657 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | | ||||| || || || || | |||||||| ||||| || Sbjct 5656 TGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 5608 >seq31326 Length=100 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 46411 GATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCG 46470 ||| ||||||||||| |||||||| | || || ||||||||||| ||||| |||| ||| Sbjct 1 GATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCG 60 Query 46471 CTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 ||| ||||||| || | || |||||||||| |||||| Sbjct 61 CTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 99 >seq31299 Length=100 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 46411 GATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCG 46470 ||| ||||||||||| |||||||| | || || ||||||||||| || || |||| ||| Sbjct 100 GATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATCAGGCG 41 Query 46471 CTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 ||| ||||||| || | || |||||||||| |||||| Sbjct 40 CTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564967212746640