Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq8335 140 3e-28
seq20113 134 1e-26
seq37272 127 2e-24
seq35245 116 4e-21
seq1514 114 1e-20
seq2224 113 5e-20
seq7069 109 5e-19
seq4446 109 5e-19
seq2280 102 8e-17
>seq8335
Length=118861
Score = 140 bits (154), Expect = 3e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || |||||||| || || || ||||| | || ||||| | ||
Sbjct 14735 ATGCAAATCTTCGTCAAGACGCTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 14794
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | || || |||| ||||| ||||| ||||| |||| |||
Sbjct 14795 GACACGATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGATCAA 14854
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| ||| ||||| ||||| || |||| |||||||| |||||||||
Sbjct 14855 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCTGACTACAAC 14914
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| ||||| |||| ||||||||||| || ||| || | || ||
Sbjct 14915 ATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 14961
Score = 96.9 bits (106), Expect = 3e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || ||||| || ||||| |||||||| | || || ||| | ||
Sbjct 14507 ATGCAGATCTTTGTCAAGACGCTGACCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCC 14566
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || || | ||||| ||||| ||||| |||||||
Sbjct 14567 GACACCATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCA 14625
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| ||||| | ||| || || ||||| || || | || || | |||||||||
Sbjct 14626 ACAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGTACTTTGTCCGACTACAA 14685
Query 38423 CATCCAAAAGGA 38434
||| || |||||
Sbjct 14686 CATTCAGAAGGA 14697
>seq20113
Length=64481
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| || || || ||||| | || ||||| | ||
Sbjct 11184 ATGCAAATCTTCGTCAAGACACTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 11243
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || || |||| ||||| ||||| || || |||||||
Sbjct 11244 GACACGATCGACAACG-TCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCA 11302
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| || |||| ||| ||||| ||||| || || | |||||||| ||||||||
Sbjct 11303 ACAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTGTCTGACTACAA 11362
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| |||| ||||||||||| || ||| || | || ||
Sbjct 11363 CATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 11410
Score = 100 bits (110), Expect = 3e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || ||||| |||||||| |||| || ||| | ||
Sbjct 10956 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCC 11015
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || || | ||||| ||||| ||||| |||||||
Sbjct 11016 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCA 11074
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| ||||| | || || || ||||| || || | || || || |||||||||
Sbjct 11075 ACAGCGCCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCCGACTACAA 11134
Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446
||| || ||||| |||| || ||
Sbjct 11135 CATTCAGAAGGAGTCGACTCTTCA 11158
>seq37272
Length=476240
Score = 127 bits (140), Expect = 2e-24
Identities = 194/276 (70%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||||||||| ||||| ||| || | || ||||| | ||||||||| ||| || ||
Sbjct 445711 GTAGGTGTCAATGAGCAGCGAGTAAGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAA 445770
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|||||| ||||| || |||||| ||||| || || | ||| ||||| || || ||
Sbjct 445771 GCCGTAGAAGCATCGAGCCTCGGGAACCTGGACCTCGGCACTGAAGCGCTCAACGAGGTT 445830
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||||||||| || ||||| || ||||| || | ||| |||||| |
Sbjct 445831 CTCGTTGACGATGCCATCTGAAGCGGCAAAGAAGGCAAGGATGTGTGAGATGAAGTACTT 445890
Query 133347 CTCGTTGTC---GTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
|| | ||| | || | | ||||||| | ||||||||||| || | ||| ||
Sbjct 445891 TTCATCGTCATTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCTTC 445950
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||||| || || || || || || ||||||||
Sbjct 445951 GGCGGTCCAGAAAGAAGCTTCTGCCTTCTTGTACAT 445986
>seq35245
Length=420
Score = 116 bits (128), Expect = 4e-21
Identities = 155/215 (72%), Gaps = 3/215 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||||||||| || |||||| | || || ||| | ||
Sbjct 335 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 276
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| ||||| || ||| ||||||||
Sbjct 275 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAA 216
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || || ||||| ||||| || || | ||||| || ||||||||||
Sbjct 215 CAGCGCCTGATN---GCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAAC 159
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || ||||| | ||||| ||
Sbjct 158 ATCCAGAAGGAGTCCACTCTGCACCTCGTGCTCCG 124
>seq1514
Length=10590
Score = 114 bits (126), Expect = 1e-20
Identities = 129/170 (76%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| ||||||||| | || |||||| || | |||| | | | |||| ||||
Sbjct 5606 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACG-TTAAG 5664
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
|| |||| ||||| ||||| || || ||||||||||||| || || | ||| |||
Sbjct 5665 TCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAACAGCGCCTGATCTTCGCCGGC 5724
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434
|| ||||| || || | |||||||| ||||||||||||||| |||||
Sbjct 5725 AAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGA 5774
>seq2224
Length=467227
Score = 113 bits (124), Expect = 5e-20
Identities = 128/172 (74%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 38262 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTT 38321
|| || |||||||| ||||||||| | || || ||| || |||||| | | | | |
Sbjct 102589 ACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGACACCATTGACAATGTC 102648
Query 38322 AAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCG 38381
|| || |||| ||||| ||||| || ||| ||||||||||||| || |||| |||
Sbjct 102649 AAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAACAGCGCCTGATTTTCGCC 102708
Query 38382 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433
||||| ||||| || || | ||||| || ||||||||||||||| ||||
Sbjct 102709 GGCAAGCAGCTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGG 102760
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| | || || ||| || |||||| | |
Sbjct 111929 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGACACCATC 111988
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| | ||||||||||| ||
Sbjct 111989 GACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGCCTG 112048
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|||| ||| ||||| ||||| || || | ||||| | ||||||||||||||| |||
Sbjct 112049 ATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTTTGTCCGACTACAACATCCAGAAG 112108
Query 38433 G 38433
|
Sbjct 112109 G 112109
>seq7069
Length=10009
Score = 109 bits (120), Expect = 5e-19
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944
||||| || ||||| || || || | |||||||| | || ||||| ||||||
Sbjct 238 GAACAGCAGACAAGCGAAATCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGA 179
Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004
|||||||| ||| ||||||||||| || || |||||||| || || | |||||| ||
Sbjct 178 GAAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATTGAGGCGAAGGCACC 119
Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGT-GGCTT 133063
||||||| ||||| ||| |||||||||| || ||||| | | || || | |||
Sbjct 118 ACTGAAGAAGATACCCTCAACGACCGCGAAAGCAACGAGGCGGGTGGCAAAGGTAGACTT 59
Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100
||| | || |||||| || ||||| || |||||
Sbjct 58 CTTATC-GGTGATCCATGTCAAGGCCCAGTCAGCCTT 23
>seq4446
Length=444291
Score = 109 bits (120), Expect = 5e-19
Identities = 190/276 (69%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||||||||| ||||| ||| || | || ||||| | ||||||||| || || ||
Sbjct 123530 GTAGGTGTCAATGAGCAGCGAGTAAGTCTCGGAGTGGATGTTCTCCATCATAATCTGGAA 123589
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|||||| ||||| || ||||| ||||| || || | ||| ||||| || || ||
Sbjct 123590 GCCGTAGAAGCATCGAGCCTCAGGAACCTGGACCTCGGCACTGAAGCGCTCAACGAGGTT 123649
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||||||||| || ||||| || ||||| || | ||| |||||| |
Sbjct 123650 CTCGTTGACGATGCCATCTGAAGCGGCAAAGAAGGCAAGGATGTGTGAGATGAAGTACTT 123709
Query 133347 CTCGTTGTC---GTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
|| | || | || | | ||||||| | ||||| || || || | ||| ||
Sbjct 123710 TTCATCATCATTGATCTTGTTGTTCCAGTCGTGGAGATCCTTAGATAGATCAATCTCTTC 123769
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||||| || || ||||| || || ||||||||
Sbjct 123770 GGCGGTCCAGAAGGAAGCCTCTGCCTTCTTGTACAT 123805
>seq2280
Length=241
Score = 102 bits (112), Expect = 8e-17
Identities = 127/174 (73%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||||||||| ||||| ||| || | || ||||| | ||||||||| ||| || ||
Sbjct 56 GTAGGTGTCAATGAGCAGCGAGTAAGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAA 115
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|||||| ||||| || |||||| ||||| || || | ||| ||||| || || ||
Sbjct 116 GCCGTAGAAGCATCGAGCCTCGGGAACCTGGACCTCGGCACTGAAGCGCTCAACGAGGTT 175
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAA 133340
|||||||||||||| || ||||| || ||||| || | ||| ||||||
Sbjct 176 CTCGTTGACGATGCCATCTGAAGCGGCAAAGAAGGCAAGGATGTGTGAGATGAA 229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499932829594880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |