Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq8335 140 3e-28 seq20113 134 1e-26 seq37272 127 2e-24 seq35245 116 4e-21 seq1514 114 1e-20 seq2224 113 5e-20 seq7069 109 5e-19 seq4446 109 5e-19 seq2280 102 8e-17 >seq8335 Length=118861 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || |||||||| || || || ||||| | || ||||| | || Sbjct 14735 ATGCAAATCTTCGTCAAGACGCTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 14794 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || |||| ||||| ||||| ||||| |||| ||| Sbjct 14795 GACACGATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGATCAA 14854 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| ||||| ||||| || |||| |||||||| ||||||||| Sbjct 14855 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCTGACTACAAC 14914 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| |||| ||||||||||| || ||| || | || || Sbjct 14915 ATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 14961 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || ||||| |||||||| | || || ||| | || Sbjct 14507 ATGCAGATCTTTGTCAAGACGCTGACCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCC 14566 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || || | ||||| ||||| ||||| ||||||| Sbjct 14567 GACACCATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCA 14625 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | ||| || || ||||| || || | || || | ||||||||| Sbjct 14626 ACAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGTACTTTGTCCGACTACAA 14685 Query 38423 CATCCAAAAGGA 38434 ||| || ||||| Sbjct 14686 CATTCAGAAGGA 14697 >seq20113 Length=64481 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || || ||||| | || ||||| | || Sbjct 11184 ATGCAAATCTTCGTCAAGACACTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 11243 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || |||| ||||| ||||| || || ||||||| Sbjct 11244 GACACGATCGACAACG-TCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCA 11302 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || |||| ||| ||||| ||||| || || | |||||||| |||||||| Sbjct 11303 ACAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTGTCTGACTACAA 11362 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| ||||||||||| || ||| || | || || Sbjct 11363 CATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 11410 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| |||| || ||| | || Sbjct 10956 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCC 11015 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || || | ||||| ||||| ||||| ||||||| Sbjct 11016 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCA 11074 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | || || || ||||| || || | || || || ||||||||| Sbjct 11075 ACAGCGCCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCCGACTACAA 11134 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 ||| || ||||| |||| || || Sbjct 11135 CATTCAGAAGGAGTCGACTCTTCA 11158 >seq37272 Length=476240 Score = 127 bits (140), Expect = 2e-24 Identities = 194/276 (70%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||| ||||| ||| || | || ||||| | ||||||||| ||| || || Sbjct 445711 GTAGGTGTCAATGAGCAGCGAGTAAGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAA 445770 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| || |||||| ||||| || || | ||| ||||| || || || Sbjct 445771 GCCGTAGAAGCATCGAGCCTCGGGAACCTGGACCTCGGCACTGAAGCGCTCAACGAGGTT 445830 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||||||||| || ||||| || ||||| || | ||| |||||| | Sbjct 445831 CTCGTTGACGATGCCATCTGAAGCGGCAAAGAAGGCAAGGATGTGTGAGATGAAGTACTT 445890 Query 133347 CTCGTTGTC---GTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 || | ||| | || | | ||||||| | ||||||||||| || | ||| || Sbjct 445891 TTCATCGTCATTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCTTC 445950 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||||| || || || || || || |||||||| Sbjct 445951 GGCGGTCCAGAAAGAAGCTTCTGCCTTCTTGTACAT 445986 >seq35245 Length=420 Score = 116 bits (128), Expect = 4e-21 Identities = 155/215 (72%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| | || || ||| | || Sbjct 335 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 276 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || ||| |||||||| Sbjct 275 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAA 216 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || || ||||| ||||| || || | ||||| || |||||||||| Sbjct 215 CAGCGCCTGATN---GCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAAC 159 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || ||||| | ||||| || Sbjct 158 ATCCAGAAGGAGTCCACTCTGCACCTCGTGCTCCG 124 >seq1514 Length=10590 Score = 114 bits (126), Expect = 1e-20 Identities = 129/170 (76%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||||||| | || |||||| || | |||| | | | |||| |||| Sbjct 5606 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACG-TTAAG 5664 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || |||| ||||| ||||| || || ||||||||||||| || || | ||| ||| Sbjct 5665 TCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAACAGCGCCTGATCTTCGCCGGC 5724 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 || ||||| || || | |||||||| ||||||||||||||| ||||| Sbjct 5725 AAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGA 5774 >seq2224 Length=467227 Score = 113 bits (124), Expect = 5e-20 Identities = 128/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 38262 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTT 38321 || || |||||||| ||||||||| | || || ||| || |||||| | | | | | Sbjct 102589 ACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGACACCATTGACAATGTC 102648 Query 38322 AAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCG 38381 || || |||| ||||| ||||| || ||| ||||||||||||| || |||| ||| Sbjct 102649 AAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAACAGCGCCTGATTTTCGCC 102708 Query 38382 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 ||||| ||||| || || | ||||| || ||||||||||||||| |||| Sbjct 102709 GGCAAGCAGCTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGG 102760 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || || ||| || |||||| | | Sbjct 111929 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGACACCATC 111988 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| | ||||||||||| || Sbjct 111989 GACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGCCTG 112048 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 |||| ||| ||||| ||||| || || | ||||| | ||||||||||||||| ||| Sbjct 112049 ATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTTTGTCCGACTACAACATCCAGAAG 112108 Query 38433 G 38433 | Sbjct 112109 G 112109 >seq7069 Length=10009 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 ||||| || ||||| || || || | |||||||| | || ||||| |||||| Sbjct 238 GAACAGCAGACAAGCGAAATCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGA 179 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 |||||||| ||| ||||||||||| || || |||||||| || || | |||||| || Sbjct 178 GAAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATTGAGGCGAAGGCACC 119 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGT-GGCTT 133063 ||||||| ||||| ||| |||||||||| || ||||| | | || || | ||| Sbjct 118 ACTGAAGAAGATACCCTCAACGACCGCGAAAGCAACGAGGCGGGTGGCAAAGGTAGACTT 59 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 ||| | || |||||| || ||||| || ||||| Sbjct 58 CTTATC-GGTGATCCATGTCAAGGCCCAGTCAGCCTT 23 >seq4446 Length=444291 Score = 109 bits (120), Expect = 5e-19 Identities = 190/276 (69%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||| ||||| ||| || | || ||||| | ||||||||| || || || Sbjct 123530 GTAGGTGTCAATGAGCAGCGAGTAAGTCTCGGAGTGGATGTTCTCCATCATAATCTGGAA 123589 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| || ||||| ||||| || || | ||| ||||| || || || Sbjct 123590 GCCGTAGAAGCATCGAGCCTCAGGAACCTGGACCTCGGCACTGAAGCGCTCAACGAGGTT 123649 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||||||||| || ||||| || ||||| || | ||| |||||| | Sbjct 123650 CTCGTTGACGATGCCATCTGAAGCGGCAAAGAAGGCAAGGATGTGTGAGATGAAGTACTT 123709 Query 133347 CTCGTTGTC---GTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 || | || | || | | ||||||| | ||||| || || || | ||| || Sbjct 123710 TTCATCATCATTGATCTTGTTGTTCCAGTCGTGGAGATCCTTAGATAGATCAATCTCTTC 123769 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||||| || || ||||| || || |||||||| Sbjct 123770 GGCGGTCCAGAAGGAAGCCTCTGCCTTCTTGTACAT 123805 >seq2280 Length=241 Score = 102 bits (112), Expect = 8e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||| ||||| ||| || | || ||||| | ||||||||| ||| || || Sbjct 56 GTAGGTGTCAATGAGCAGCGAGTAAGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAA 115 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| || |||||| ||||| || || | ||| ||||| || || || Sbjct 116 GCCGTAGAAGCATCGAGCCTCGGGAACCTGGACCTCGGCACTGAAGCGCTCAACGAGGTT 175 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAA 133340 |||||||||||||| || ||||| || ||||| || | ||| |||||| Sbjct 176 CTCGTTGACGATGCCATCTGAAGCGGCAAAGAAGGCAAGGATGTGTGAGATGAA 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499932829594880