Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq114 125 9e-24 seq11113 116 5e-21 seq35329 114 2e-20 seq34216 84.2 3e-11 >seq114 Length=180687 Score = 125 bits (138), Expect = 9e-24 Identities = 242/354 (68%), Gaps = 5/354 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||| | ||| || || || ||||| || || || |||| || Sbjct 166731 TCGAAATCCTCACCACCAAGGTGGGTGTCACCGGCGGTGGCAAGCACCTCGAAGACGCCC 166790 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||||| | | || ||||| || ||||||||||| || || | || | | Sbjct 166791 TGATCAATGGACAGGAGAGAGACATCGAAGGTACCACCACCGAGATCGTA---GACAATG 166847 Query 7577 TTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | || ||| | | | ||| || || ||||| ||||| || || || || || || Sbjct 166848 ATC-TGGCGCTCGCCGTCGAGCTTGTCAAGGCCGTAGGCGATGGCGGCGGCGGTGGGCTC 166906 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | ||||| || ||| ||||| ||||| | ||||| || || || || || Sbjct 166907 GTTGACGATACGGAGGACGTTAAGGCCGGCAATGACACCAGCATCCTTGGTGGCCTGGCG 166966 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| |||||||| ||||| || ||||| |||| ||||| ||||| ||||| Sbjct 166967 CTGGTTGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTGAGTGACCTTCTTGCCGAG 167026 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || | || ||| | || ||||| ||| ||||| ||| | || ||||| || Sbjct 167027 GTAGGCCTCAGCGGTGTCCTTCATCTTGCCAAGAATCATGGCGGAGATCTCCTC 167080 >seq11113 Length=407183 Score = 116 bits (128), Expect = 5e-21 Identities = 175/248 (71%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558 ||||| || |||||||| | |||||| | | | || ||||| || ||||||||||| Sbjct 105007 TTGACCTCGAAGATACCGTCCTCAATGGTCAGGAGAGACACATCGAAGGTACCACCACCG 104948 Query 7559 AGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATA 7618 || || || ||||| ||||| || | || ||||| ||||||||||| ||||| Sbjct 104947 AGATCGAAGATGAGGACGTTGCGCTCACCCTCGACCTTCTTGTCGAGACCGTAAGCGATG 104888 Query 7619 GCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCA 7678 || || || || || || || || ||||| || ||| || || || || | || Sbjct 104887 GCAGCAGCAGTGGGCTCGTTGATGATACGGAGGACGTTGAGACCGGCGATGAGACCGGCG 104828 Query 7679 TCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCC 7738 || || || || || || || || ||||| |||||||| ||||| || | ||| ||| | Sbjct 104827 TCCTTGGTAGCCTGACGCTGAGAGTCGTTGAAGTAGGCAGGGACAGTGATGACTGCG--C 104770 Query 7739 GTGACTTT 7746 ||||||| Sbjct 104769 ATGACTTT 104762 Score = 109 bits (120), Expect = 7e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558 ||||| || |||||||| | || ||| | | | || ||||| || ||||||||||| Sbjct 94044 TTGACCTCGAAGATACCATCCTCGATGGTCAGGAGAGACACATCGAAGGTACCACCACCG 93985 Query 7559 AGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATA 7618 || || |||||||| ||||| || | || ||||| ||||||||||| ||||| Sbjct 93984 AGATCGAAAATGAGGACGTTGCGCTCACCATCAACCTTCTTGTCGAGACCGTAAGCGATG 93925 Query 7619 GCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCA 7678 || || || || || || || || ||||| || ||| || || || || | || Sbjct 93924 GCAGCGGCGGTGGGCTCGTTGATGATACGGAGGACGTTGAGACCGGCGATGAGACCAGCG 93865 Query 7679 TCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 || || || || || || || || ||||| |||||||| ||||| || | ||| Sbjct 93864 TCCTTGGTAGCCTGACGCTGAGAGTCGTTGAAGTAGGCAGGGACAGTGATGAC 93812 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/230 (68%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 ||||| ||| | ||||||| |||| ||||| | || || || ||||| || || Sbjct 93586 TTCATGTCGGCCTGGACCTCAGAGTCCTGGAACTTGCGGCCAATTAGGCGCTTGGCGTCG 93527 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || |||| | ||||||||||| | |||||||| || || || ||||| ||||| Sbjct 93526 AAGACGGTGTGGTGAGGGTTCATGGCCATCTGGTTCTTGGCGGCATCTCCGATGAGACGC 93467 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | || | || ||||| || ||||| || || || || |||||||| || Sbjct 93466 TC---GGTGTCGTTGAAAGCGACAATGGAGGGGGTGGTGCGGTTACCCTGGTCGTTGGCG 93410 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGT 8127 ||||| || |||||| ||||| | || |||||| |||| || Sbjct 93409 ATAATATCGCACTTGTCGTTGGAGTAGACGGCAACACACGAAAACGTGGT 93360 >seq35329 Length=15536 Score = 114 bits (126), Expect = 2e-20 Identities = 341/521 (65%), Gaps = 15/521 (3%) Strand=Plus/Plus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| ||||| || || | | ||| || |||||||| | | || Sbjct 4667 AGCTCCTCGAAACGGGCACGAGTGATCTGCATCTGGAAGTCCTCGCCGTCGAAGAGGGAG 4726 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 || || |||||||| | || || || | || | || ||||| |||||||| || | Sbjct 4727 TCGATCTCAATGGTGGCCTGGGCACCGCTG--GACAGGGTACGCTTGGCGCGCTCGCAAG 4784 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | || || | |||||| |||||||| |||| ||| || || ||||| || || | Sbjct 4785 CAGTGCGGAGACGACGCAGGGCACGGGGGTCGTTGGAGATGTCCTTCTTCGACTTGCGCT 4844 Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 || || | | |||| |||| |||| || | ||||| || | ||||| | || Sbjct 4845 GGAAGTCCTTCTTGCAGTGCTCGA-GGAGGCTGGTGTCGAAGTCCTGGCCACCAAGATGG 4903 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 || | || | || || ||||| |||| ||| || | ||||| | | || ||| Sbjct 4904 GTGTTACCGGAAGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTCAGGAGGGAGACA 4963 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT- 7599 || || ||||||||||| || || | ||||| ||||| || | | ||| ||| Sbjct 4964 TCGAAAGTACCACCACCGAGATCGTAGATGAGAACGTTGCGCTCCTTG---TTGGACTTG 5020 Query 7600 -----ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 |||||||||| || || || || || || || || || || || || ||| | Sbjct 5021 CCAGCGCCGAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATGCGGAGAACG 5080 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || ||||| || | | || || || || || || || || ||||| ||||| Sbjct 5081 TTGAGACCAGCGATGGCACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAA 5140 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| || | || || | | || ||||| ||||| Sbjct 5141 GCGGGGACGGTGATAACGGCCTTCTCAACCTTCTTGCCGAG 5181 >seq34216 Length=529 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/230 (68%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 ||||| ||| | ||||||| |||| ||||| | || || || ||||| || || Sbjct 385 TTCATGTCGGCCTGGACCTCAGAGTCCTGGAACTTGCGGCCAATTAGGCGCTTGGCGTCG 326 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || |||| | ||||||||||| | |||||||| || || || ||||| ||||| Sbjct 325 AAGACGGTGTGGTGAGGGTTCATGGCCATCTGGTTCTTGGCGGCATCTCCGATGAGACGC 266 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | || | || ||||| || ||||| || || || || |||||||| || Sbjct 265 TC---GGTGTCGTTGAAAGCGACAATGGAGGGGGTGGTGCGGTTACCCTGGTCGTTGGCG 209 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGT 8127 ||||| || |||||| ||||| | || |||||| |||| || Sbjct 208 ATAATATCGCACTTGTCGTTGGAGTAGACGGCAACACACGAAAACGTGGT 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634828079160880