Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq114 125 9e-24
seq11113 116 5e-21
seq35329 114 2e-20
seq34216 84.2 3e-11
>seq114
Length=180687
Score = 125 bits (138), Expect = 9e-24
Identities = 242/354 (68%), Gaps = 5/354 (1%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||| | ||| || || || ||||| || || || |||| ||
Sbjct 166731 TCGAAATCCTCACCACCAAGGTGGGTGTCACCGGCGGTGGCAAGCACCTCGAAGACGCCC 166790
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
|||||| | | || ||||| || ||||||||||| || || | || | |
Sbjct 166791 TGATCAATGGACAGGAGAGAGACATCGAAGGTACCACCACCGAGATCGTA---GACAATG 166847
Query 7577 TTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635
|| | || ||| | | | ||| || || ||||| ||||| || || || || || ||
Sbjct 166848 ATC-TGGCGCTCGCCGTCGAGCTTGTCAAGGCCGTAGGCGATGGCGGCGGCGGTGGGCTC 166906
Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695
|| | ||||| || ||| ||||| ||||| | ||||| || || || || ||
Sbjct 166907 GTTGACGATACGGAGGACGTTAAGGCCGGCAATGACACCAGCATCCTTGGTGGCCTGGCG 166966
Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
|| ||||| |||||||| ||||| || ||||| |||| ||||| ||||| |||||
Sbjct 166967 CTGGTTGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTGAGTGACCTTCTTGCCGAG 167026
Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809
|| | || ||| | || ||||| ||| ||||| ||| | || ||||| ||
Sbjct 167027 GTAGGCCTCAGCGGTGTCCTTCATCTTGCCAAGAATCATGGCGGAGATCTCCTC 167080
>seq11113
Length=407183
Score = 116 bits (128), Expect = 5e-21
Identities = 175/248 (71%), Gaps = 2/248 (1%)
Strand=Plus/Minus
Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558
||||| || |||||||| | |||||| | | | || ||||| || |||||||||||
Sbjct 105007 TTGACCTCGAAGATACCGTCCTCAATGGTCAGGAGAGACACATCGAAGGTACCACCACCG 104948
Query 7559 AGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATA 7618
|| || || ||||| ||||| || | || ||||| ||||||||||| |||||
Sbjct 104947 AGATCGAAGATGAGGACGTTGCGCTCACCCTCGACCTTCTTGTCGAGACCGTAAGCGATG 104888
Query 7619 GCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCA 7678
|| || || || || || || || ||||| || ||| || || || || | ||
Sbjct 104887 GCAGCAGCAGTGGGCTCGTTGATGATACGGAGGACGTTGAGACCGGCGATGAGACCGGCG 104828
Query 7679 TCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCC 7738
|| || || || || || || || ||||| |||||||| ||||| || | ||| ||| |
Sbjct 104827 TCCTTGGTAGCCTGACGCTGAGAGTCGTTGAAGTAGGCAGGGACAGTGATGACTGCG--C 104770
Query 7739 GTGACTTT 7746
|||||||
Sbjct 104769 ATGACTTT 104762
Score = 109 bits (120), Expect = 7e-19
Identities = 164/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558
||||| || |||||||| | || ||| | | | || ||||| || |||||||||||
Sbjct 94044 TTGACCTCGAAGATACCATCCTCGATGGTCAGGAGAGACACATCGAAGGTACCACCACCG 93985
Query 7559 AGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATA 7618
|| || |||||||| ||||| || | || ||||| ||||||||||| |||||
Sbjct 93984 AGATCGAAAATGAGGACGTTGCGCTCACCATCAACCTTCTTGTCGAGACCGTAAGCGATG 93925
Query 7619 GCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCA 7678
|| || || || || || || || ||||| || ||| || || || || | ||
Sbjct 93924 GCAGCGGCGGTGGGCTCGTTGATGATACGGAGGACGTTGAGACCGGCGATGAGACCAGCG 93865
Query 7679 TCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731
|| || || || || || || || ||||| |||||||| ||||| || | |||
Sbjct 93864 TCCTTGGTAGCCTGACGCTGAGAGTCGTTGAAGTAGGCAGGGACAGTGATGAC 93812
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/230 (68%), Gaps = 3/230 (1%)
Strand=Plus/Minus
Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957
||||| ||| | ||||||| |||| ||||| | || || || ||||| || ||
Sbjct 93586 TTCATGTCGGCCTGGACCTCAGAGTCCTGGAACTTGCGGCCAATTAGGCGCTTGGCGTCG 93527
Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017
|| || |||| | ||||||||||| | |||||||| || || || ||||| |||||
Sbjct 93526 AAGACGGTGTGGTGAGGGTTCATGGCCATCTGGTTCTTGGCGGCATCTCCGATGAGACGC 93467
Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077
|| | || | || ||||| || ||||| || || || || |||||||| ||
Sbjct 93466 TC---GGTGTCGTTGAAAGCGACAATGGAGGGGGTGGTGCGGTTACCCTGGTCGTTGGCG 93410
Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGT 8127
||||| || |||||| ||||| | || |||||| |||| ||
Sbjct 93409 ATAATATCGCACTTGTCGTTGGAGTAGACGGCAACACACGAAAACGTGGT 93360
>seq35329
Length=15536
Score = 114 bits (126), Expect = 2e-20
Identities = 341/521 (65%), Gaps = 15/521 (3%)
Strand=Plus/Plus
Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303
|| ||||| ||||| ||||| || || | | ||| || |||||||| | | ||
Sbjct 4667 AGCTCCTCGAAACGGGCACGAGTGATCTGCATCTGGAAGTCCTCGCCGTCGAAGAGGGAG 4726
Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361
|| || |||||||| | || || || | || | || ||||| |||||||| || |
Sbjct 4727 TCGATCTCAATGGTGGCCTGGGCACCGCTG--GACAGGGTACGCTTGGCGCGCTCGCAAG 4784
Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421
| || || | |||||| |||||||| |||| ||| || || ||||| || || |
Sbjct 4785 CAGTGCGGAGACGACGCAGGGCACGGGGGTCGTTGGAGATGTCCTTCTTCGACTTGCGCT 4844
Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480
|| || | | |||| |||| |||| || | ||||| || | ||||| | ||
Sbjct 4845 GGAAGTCCTTCTTGCAGTGCTCGA-GGAGGCTGGTGTCGAAGTCCTGGCCACCAAGATGG 4903
Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540
|| | || | || || ||||| |||| ||| || | ||||| | | || |||
Sbjct 4904 GTGTTACCGGAAGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTCAGGAGGGAGACA 4963
Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT- 7599
|| || ||||||||||| || || | ||||| ||||| || | | ||| |||
Sbjct 4964 TCGAAAGTACCACCACCGAGATCGTAGATGAGAACGTTGCGCTCCTTG---TTGGACTTG 5020
Query 7600 -----ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
|||||||||| || || || || || || || || || || || || ||| |
Sbjct 5021 CCAGCGCCGAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATGCGGAGAACG 5080
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|| || ||||| || | | || || || || || || || || ||||| |||||
Sbjct 5081 TTGAGACCAGCGATGGCACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAA 5140
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
|| ||||| || | || || | | || ||||| |||||
Sbjct 5141 GCGGGGACGGTGATAACGGCCTTCTCAACCTTCTTGCCGAG 5181
>seq34216
Length=529
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/230 (68%), Gaps = 3/230 (1%)
Strand=Plus/Minus
Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957
||||| ||| | ||||||| |||| ||||| | || || || ||||| || ||
Sbjct 385 TTCATGTCGGCCTGGACCTCAGAGTCCTGGAACTTGCGGCCAATTAGGCGCTTGGCGTCG 326
Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017
|| || |||| | ||||||||||| | |||||||| || || || ||||| |||||
Sbjct 325 AAGACGGTGTGGTGAGGGTTCATGGCCATCTGGTTCTTGGCGGCATCTCCGATGAGACGC 266
Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077
|| | || | || ||||| || ||||| || || || || |||||||| ||
Sbjct 265 TC---GGTGTCGTTGAAAGCGACAATGGAGGGGGTGGTGCGGTTACCCTGGTCGTTGGCG 209
Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGT 8127
||||| || |||||| ||||| | || |||||| |||| ||
Sbjct 208 ATAATATCGCACTTGTCGTTGGAGTAGACGGCAACACACGAAAACGTGGT 159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 634828079160880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |