Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq31830 230 3e-55
seq336 185 1e-41
seq31807 165 1e-35
seq7069 145 9e-30
>seq31830
Length=311768
Score = 230 bits (254), Expect = 3e-55
Identities = 905/1403 (65%), Gaps = 49/1403 (3%)
Strand=Plus/Minus
Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA---TTGATTC 111667
||| ||| ||||| | ||||| || | |||||||| |||||| || | ||||
Sbjct 111748 CCCGCAGCACATGATTATGCGTGTTTCCGTCGGTATC--TGGGGA-GACAACGTTGAGCG 111692
Query 111668 TGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCT 111727
||| | ||||| ||| || |||||| | | |||| |||||| | || |||||
Sbjct 111691 TGTCATTGAGACGTACAACCTCATGTCCAGCAAATTCTTCACACACGCATCTCCTACCCT 111632
Query 111728 CTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787
|||||||||||| || || | || |||| || ||||| ||| | |||||
Sbjct 111631 CTTCAACGCTGGCACGCCTCAGGCTCAGCTGTCGTCCTGCTTCCTGGTTGACATGAAGGA 111572
Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847
|| || | || || |||| ||| |||| |||||| ||||| ||| |||
Sbjct 111571 TGACAGCATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGC 111512
Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTAC 111907
||||||||| || || || ||||| || | |||| ||| ||| || ||
Sbjct 111511 TGGTGGTATTGGTCTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCAC 111452
Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967
|| || ||| | || || | || ||||||||||| || ||| ||| ||||||||
Sbjct 111451 CAACGGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTA 111392
Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021
|| |||| | || ||||| | || || | || |||| |||||||||||
Sbjct 111391 CGTTGACCAGGGCGGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGAGCCATG 111335
Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CG 112079
|||||| ||| || | ||||||||||| | || ||||| || | ||||||| ||
Sbjct 111334 GCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCG 111275
Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139
|| | |||||||||||| || | ||||| || ||||||||||||||| | || |||
Sbjct 111274 CGCT--CGCGATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG 111217
Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199
||| ||| | ||| ||||| | || || || || || || || | || |
Sbjct 111216 AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAC 111157
Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC---- 112255
||||| |||||||| ||| | ||| ||||||||| ||| | ||| | ||
Sbjct 111156 GGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAG-----AAGGCTGGCAAGGGCCGCA 111102
Query 112256 -GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 112313
||| | | || || || | | ||| | || | ||| || |||| |||||||| ||
Sbjct 111101 AGACCAT-CAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGC 111043
Query 112314 ACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 112373
| || | ||||| ||||| || ||| |||| ||||| || || ||||| | |||
Sbjct 111042 AACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGT 110983
Query 112374 GTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 112433
|| || |||||||| || ||||| || | || | | | ||||||
Sbjct 110982 ACCATTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTT 110923
Query 112434 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC- 112492
|| || || ||||| || || | || || ||| || || ||| | | |||| | |
Sbjct 110922 GCCGTCTGCAACCTGGCCTCTCTGGCCCTGCCCGCCTACGTTGAT-TACA-ACAACGGCG 110865
Query 112493 -ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551
| ||| | | || |||||| | || || | ||| | ||||| |||||
Sbjct 110864 TGTATGACTTCAAGAAGCTCCACCAGGTCACTCAGGTCGTCGTCAGGAACCTCAACAGGA 110805
Query 112552 TTATTGATAGAAATTTTTACCCCG---TTGAGACTGCTCGTAAATCTAATATGAGACACC 112608
| || || || |||||||| | ||| ||||| || || ||| | || |
Sbjct 110804 TCATCGACGTGAACCATTACCCCGTCATCGAG---GCTCGCAACAGCAACATGCGCCATC 110748
Query 112609 GTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCAT 112668
| || ||||| || |||||||| || | || |||| ||| || | ||| | |
Sbjct 110747 GGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGCTTTCCTTGCTCTCCGCATGCCCT 110688
Query 112669 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728
|||| || || || ||||| |||| || || |||||||| || || ||||| |
Sbjct 110687 TTGAGTCTCCTGAGGCCAAGGAGCTCAACAAGCAGATCTTTGAGACCATCTACCACGCTG 110628
Query 112729 CTCTTGAGGCGAGT--TCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGG 112786
| | ||| | || | || | || ||| || || || || |||| ||||||
Sbjct 110627 C-CCTGA-CCATGTCATGCAAGCTCGCTCAGGAGGAAGGCCCCTACTCCACCTATGAGGG 110570
Query 112787 TTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--T 112844
|| || | || || || | ||||||| || |||| |||| || | || | ||
Sbjct 110569 CTCGCCCGTCTCCCAGGGTATCCTTCAATACGACATGT-GGAACGTCAAGCCTA-CTGAC 110512
Query 112845 CACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 112904
| | ||||||| || || ||| | |||||| | | || | ||||||||||||
Sbjct 110511 CTTTGGGACTGGGCCGACCTGAAGAGCCAGATCAAGCAACACGGCGTCCGTAACAGTCTT 110452
Query 112905 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 112964
| |||| || ||||| || ||| ||| | || ||| | || || || || |||||
Sbjct 110451 CTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGCTTC 110392
Query 112965 GAACCCTACACGACGAACATCTA 112987
|| || |||||| | ||||||||
Sbjct 110391 GAGCCTTACACGTCCAACATCTA 110369
>seq336
Length=177044
Score = 185 bits (204), Expect = 1e-41
Identities = 533/812 (66%), Gaps = 31/812 (4%)
Strand=Plus/Plus
Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA---TTGATTC 111667
||| ||| ||||| | ||||| || | | |||||| |||||| || | ||||
Sbjct 110262 CCCGCAGCACATGATTATGCGTGTGTCCGTTGGTATC--TGGGGA-GACAACGTTGAGCG 110318
Query 111668 TGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCT 111727
||| | ||||| ||| || |||||| | |||| ||||| | || |||||
Sbjct 110319 TGTCATTGAGACGTACAACCTCATGTCCAACAAATTCTTCACACACGCCTCTCCTACCCT 110378
Query 111728 CTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787
|||||||||||| || || | || |||| || ||||| | | | |||||
Sbjct 110379 CTTCAACGCTGGCACGCCCCAGGCTCAGCTGTCGTCCTGCTTCCTGGTCGACATGAAGGA 110438
Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847
||| || | || || |||| ||| |||| |||||| ||||| ||| |||
Sbjct 110439 TGATAGCATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGC 110498
Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTAC 111907
||||||||| || || || ||||| || | |||| ||| ||| || ||
Sbjct 110499 TGGTGGTATTGGTCTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCAC 110558
Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967
|| || ||| | || || | || ||||||||||| || ||| ||| ||||||||
Sbjct 110559 CAACGGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTA 110618
Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021
|| |||| | || ||||| | || || | || |||| |||||||||||
Sbjct 110619 CGTTGACCAGGGCGGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGAGCCATG 110675
Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CG 112079
|||||| ||| || | ||||||||||| | || ||||| || | ||||||| ||
Sbjct 110676 GCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCG 110735
Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139
|| | |||||||||||| || | ||||| || ||||||||||||||| | || |||
Sbjct 110736 CGCT--CGCGATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG 110793
Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199
||| ||| | ||| ||||| | || || || || || || || | || |
Sbjct 110794 AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAC 110853
Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC---- 112255
||||| |||||||| ||| | ||| ||||||||| ||| | ||| | ||
Sbjct 110854 GGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAG-----AAGGCTGGCAAGGGCCGCA 110908
Query 112256 -GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 112313
||| | | || || || | | ||| | || | ||| || |||| |||||||| ||
Sbjct 110909 AGACCAT-CAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGC 110967
Query 112314 ACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 112373
| || | ||||| ||||| || ||| |||| ||||| || || ||||| | |||
Sbjct 110968 AACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGT 111027
Query 112374 GTGATCAAGAGTTCCAACCTCTGTACAGAAAT 112405
|| || |||||||| || ||||| ||
Sbjct 111028 ACCATTCGCAGCTCCAACCTGTGCACAGAGAT 111059
>seq31807
Length=5160
Score = 165 bits (182), Expect = 1e-35
Identities = 411/619 (66%), Gaps = 25/619 (4%)
Strand=Plus/Minus
Query 111801 GGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGG 111860
|| || |||| ||| |||| |||||| ||||| ||| |||||||||||| ||
Sbjct 5151 GGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGT 5092
Query 111861 ATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCA 111920
|| || ||||| || | |||| ||| ||| || || || || |||
Sbjct 5091 CTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCACCAACGGCACTTCA 5032
Query 111921 GATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCT 111980
| || || | || ||||||||||| || ||| ||| |||||||| || |||| |
Sbjct 5031 AACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGC 4972
Query 111981 GG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATC 112034
|| ||||| | || || | || |||| ||||||||||||||||| ||| ||
Sbjct 4971 GGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTC 4915
Query 112035 ATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGGTGCCGCGATC 112092
| ||||||||||| | || ||||| || | ||||||| |||| | |||||||
Sbjct 4914 TTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCT--CGCGATC 4857
Query 112093 TCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATT 112152
||||| || | ||||| || ||||||||||||||| | || ||| ||| ||| | |
Sbjct 4856 TCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACT 4797
Query 112153 GGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTG 112212
|| ||||| | || || || || || || || | || | ||||| |||||||
Sbjct 4796 GGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTACGGTGACGAGTTTG 4737
Query 112213 AAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC-----GACGGTGCCAGC 112267
| ||| | ||| ||||||||| ||| | ||| | || ||| | | ||
Sbjct 4736 AGGCCTTGTACGAGAAGTACGAG-----AAGGCTGGCAAGGGCCGCAAGACCAT-CAAGG 4683
Query 112268 TGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGC 112326
|| || | | ||| | || | ||| || |||| |||||||| || | || | ||||
Sbjct 4682 CGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGC 4623
Query 112327 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTT 112386
| ||||| || ||| |||| ||||| || || ||||| | ||| || || |
Sbjct 4622 TCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTCGCAGCT 4563
Query 112387 CCAACCTCTGTACAGAAAT 112405
||||||| || ||||| ||
Sbjct 4562 CCAACCTGTGCACAGAGAT 4544
>seq7069
Length=10009
Score = 145 bits (160), Expect = 9e-30
Identities = 163/217 (75%), Gaps = 6/217 (3%)
Strand=Plus/Plus
Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAA 102163
||||||||| || |||| ||||| || || ||||| ||| ||| | |||| ||
Sbjct 1 AACAGTTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAA 60
Query 102164 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223
||| | ||||||| || ||| | || || ||| ||||||||||||||||||
Sbjct 61 GTC---TACCTTTGCCACCCGCCTCGTTGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAG 117
Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283
|||| ||||| | | || | ||||||||||||||||| |||||||| || || ||
Sbjct 118 TGGTGCCTTCGCCTCAATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTT 177
Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
|||||||||||| ||||||||||||||||| || |||
Sbjct 178 CTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCAC 214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620444583315040
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