Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq31830 230 3e-55 seq336 185 1e-41 seq31807 165 1e-35 seq7069 145 9e-30 >seq31830 Length=311768 Score = 230 bits (254), Expect = 3e-55 Identities = 905/1403 (65%), Gaps = 49/1403 (3%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA---TTGATTC 111667 ||| ||| ||||| | ||||| || | |||||||| |||||| || | |||| Sbjct 111748 CCCGCAGCACATGATTATGCGTGTTTCCGTCGGTATC--TGGGGA-GACAACGTTGAGCG 111692 Query 111668 TGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCT 111727 ||| | ||||| ||| || |||||| | | |||| |||||| | || ||||| Sbjct 111691 TGTCATTGAGACGTACAACCTCATGTCCAGCAAATTCTTCACACACGCATCTCCTACCCT 111632 Query 111728 CTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787 |||||||||||| || || | || |||| || ||||| ||| | ||||| Sbjct 111631 CTTCAACGCTGGCACGCCTCAGGCTCAGCTGTCGTCCTGCTTCCTGGTTGACATGAAGGA 111572 Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847 || || | || || |||| ||| |||| |||||| ||||| ||| ||| Sbjct 111571 TGACAGCATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGC 111512 Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTAC 111907 ||||||||| || || || ||||| || | |||| ||| ||| || || Sbjct 111511 TGGTGGTATTGGTCTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCAC 111452 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || ||| | || || | || ||||||||||| || ||| ||| |||||||| Sbjct 111451 CAACGGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTA 111392 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 || |||| | || ||||| | || || | || |||| ||||||||||| Sbjct 111391 CGTTGACCAGGGCGGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGAGCCATG 111335 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CG 112079 |||||| ||| || | ||||||||||| | || ||||| || | ||||||| || Sbjct 111334 GCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCG 111275 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || | |||||||||||| || | ||||| || ||||||||||||||| | || ||| Sbjct 111274 CGCT--CGCGATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG 111217 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 ||| ||| | ||| ||||| | || || || || || || || | || | Sbjct 111216 AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAC 111157 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC---- 112255 ||||| |||||||| ||| | ||| ||||||||| ||| | ||| | || Sbjct 111156 GGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAG-----AAGGCTGGCAAGGGCCGCA 111102 Query 112256 -GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 112313 ||| | | || || || | | ||| | || | ||| || |||| |||||||| || Sbjct 111101 AGACCAT-CAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGC 111043 Query 112314 ACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 112373 | || | ||||| ||||| || ||| |||| ||||| || || ||||| | ||| Sbjct 111042 AACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGT 110983 Query 112374 GTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 112433 || || |||||||| || ||||| || | || | | | |||||| Sbjct 110982 ACCATTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTT 110923 Query 112434 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC- 112492 || || || ||||| || || | || || ||| || || ||| | | |||| | | Sbjct 110922 GCCGTCTGCAACCTGGCCTCTCTGGCCCTGCCCGCCTACGTTGAT-TACA-ACAACGGCG 110865 Query 112493 -ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551 | ||| | | || |||||| | || || | ||| | ||||| ||||| Sbjct 110864 TGTATGACTTCAAGAAGCTCCACCAGGTCACTCAGGTCGTCGTCAGGAACCTCAACAGGA 110805 Query 112552 TTATTGATAGAAATTTTTACCCCG---TTGAGACTGCTCGTAAATCTAATATGAGACACC 112608 | || || || |||||||| | ||| ||||| || || ||| | || | Sbjct 110804 TCATCGACGTGAACCATTACCCCGTCATCGAG---GCTCGCAACAGCAACATGCGCCATC 110748 Query 112609 GTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCAT 112668 | || ||||| || |||||||| || | || |||| ||| || | ||| | | Sbjct 110747 GGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGCTTTCCTTGCTCTCCGCATGCCCT 110688 Query 112669 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728 |||| || || || ||||| |||| || || |||||||| || || ||||| | Sbjct 110687 TTGAGTCTCCTGAGGCCAAGGAGCTCAACAAGCAGATCTTTGAGACCATCTACCACGCTG 110628 Query 112729 CTCTTGAGGCGAGT--TCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGG 112786 | | ||| | || | || | || ||| || || || || |||| |||||| Sbjct 110627 C-CCTGA-CCATGTCATGCAAGCTCGCTCAGGAGGAAGGCCCCTACTCCACCTATGAGGG 110570 Query 112787 TTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--T 112844 || || | || || || | ||||||| || |||| |||| || | || | || Sbjct 110569 CTCGCCCGTCTCCCAGGGTATCCTTCAATACGACATGT-GGAACGTCAAGCCTA-CTGAC 110512 Query 112845 CACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 112904 | | ||||||| || || ||| | |||||| | | || | |||||||||||| Sbjct 110511 CTTTGGGACTGGGCCGACCTGAAGAGCCAGATCAAGCAACACGGCGTCCGTAACAGTCTT 110452 Query 112905 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 112964 | |||| || ||||| || ||| ||| | || ||| | || || || || ||||| Sbjct 110451 CTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGCTTC 110392 Query 112965 GAACCCTACACGACGAACATCTA 112987 || || |||||| | |||||||| Sbjct 110391 GAGCCTTACACGTCCAACATCTA 110369 >seq336 Length=177044 Score = 185 bits (204), Expect = 1e-41 Identities = 533/812 (66%), Gaps = 31/812 (4%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA---TTGATTC 111667 ||| ||| ||||| | ||||| || | | |||||| |||||| || | |||| Sbjct 110262 CCCGCAGCACATGATTATGCGTGTGTCCGTTGGTATC--TGGGGA-GACAACGTTGAGCG 110318 Query 111668 TGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCT 111727 ||| | ||||| ||| || |||||| | |||| ||||| | || ||||| Sbjct 110319 TGTCATTGAGACGTACAACCTCATGTCCAACAAATTCTTCACACACGCCTCTCCTACCCT 110378 Query 111728 CTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787 |||||||||||| || || | || |||| || ||||| | | | ||||| Sbjct 110379 CTTCAACGCTGGCACGCCCCAGGCTCAGCTGTCGTCCTGCTTCCTGGTCGACATGAAGGA 110438 Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847 ||| || | || || |||| ||| |||| |||||| ||||| ||| ||| Sbjct 110439 TGATAGCATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGC 110498 Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTAC 111907 ||||||||| || || || ||||| || | |||| ||| ||| || || Sbjct 110499 TGGTGGTATTGGTCTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCAC 110558 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || ||| | || || | || ||||||||||| || ||| ||| |||||||| Sbjct 110559 CAACGGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTA 110618 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 || |||| | || ||||| | || || | || |||| ||||||||||| Sbjct 110619 CGTTGACCAGGGCGGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGAGCCATG 110675 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CG 112079 |||||| ||| || | ||||||||||| | || ||||| || | ||||||| || Sbjct 110676 GCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCG 110735 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || | |||||||||||| || | ||||| || ||||||||||||||| | || ||| Sbjct 110736 CGCT--CGCGATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG 110793 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 ||| ||| | ||| ||||| | || || || || || || || | || | Sbjct 110794 AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAC 110853 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC---- 112255 ||||| |||||||| ||| | ||| ||||||||| ||| | ||| | || Sbjct 110854 GGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAG-----AAGGCTGGCAAGGGCCGCA 110908 Query 112256 -GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 112313 ||| | | || || || | | ||| | || | ||| || |||| |||||||| || Sbjct 110909 AGACCAT-CAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGC 110967 Query 112314 ACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 112373 | || | ||||| ||||| || ||| |||| ||||| || || ||||| | ||| Sbjct 110968 AACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGT 111027 Query 112374 GTGATCAAGAGTTCCAACCTCTGTACAGAAAT 112405 || || |||||||| || ||||| || Sbjct 111028 ACCATTCGCAGCTCCAACCTGTGCACAGAGAT 111059 >seq31807 Length=5160 Score = 165 bits (182), Expect = 1e-35 Identities = 411/619 (66%), Gaps = 25/619 (4%) Strand=Plus/Minus Query 111801 GGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGG 111860 || || |||| ||| |||| |||||| ||||| ||| |||||||||||| || Sbjct 5151 GGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGT 5092 Query 111861 ATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCA 111920 || || ||||| || | |||| ||| ||| || || || || ||| Sbjct 5091 CTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCACCAACGGCACTTCA 5032 Query 111921 GATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCT 111980 | || || | || ||||||||||| || ||| ||| |||||||| || |||| | Sbjct 5031 AACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGC 4972 Query 111981 GG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATC 112034 || ||||| | || || | || |||| ||||||||||||||||| ||| || Sbjct 4971 GGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTC 4915 Query 112035 ATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGGTGCCGCGATC 112092 | ||||||||||| | || ||||| || | ||||||| |||| | ||||||| Sbjct 4914 TTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCT--CGCGATC 4857 Query 112093 TCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATT 112152 ||||| || | ||||| || ||||||||||||||| | || ||| ||| ||| | | Sbjct 4856 TCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACT 4797 Query 112153 GGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTG 112212 || ||||| | || || || || || || || | || | ||||| ||||||| Sbjct 4796 GGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTACGGTGACGAGTTTG 4737 Query 112213 AAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC-----GACGGTGCCAGC 112267 | ||| | ||| ||||||||| ||| | ||| | || ||| | | || Sbjct 4736 AGGCCTTGTACGAGAAGTACGAG-----AAGGCTGGCAAGGGCCGCAAGACCAT-CAAGG 4683 Query 112268 TGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGC 112326 || || | | ||| | || | ||| || |||| |||||||| || | || | |||| Sbjct 4682 CGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGC 4623 Query 112327 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTT 112386 | ||||| || ||| |||| ||||| || || ||||| | ||| || || | Sbjct 4622 TCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTCGCAGCT 4563 Query 112387 CCAACCTCTGTACAGAAAT 112405 ||||||| || ||||| || Sbjct 4562 CCAACCTGTGCACAGAGAT 4544 >seq7069 Length=10009 Score = 145 bits (160), Expect = 9e-30 Identities = 163/217 (75%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAA 102163 ||||||||| || |||| ||||| || || ||||| ||| ||| | |||| || Sbjct 1 AACAGTTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAA 60 Query 102164 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 ||| | ||||||| || ||| | || || ||| |||||||||||||||||| Sbjct 61 GTC---TACCTTTGCCACCCGCCTCGTTGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAG 117 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 |||| ||||| | | || | ||||||||||||||||| |||||||| || || || Sbjct 118 TGGTGCCTTCGCCTCAATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTT 177 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||||||||||| ||||||||||||||||| || ||| Sbjct 178 CTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCAC 214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620444583315040