Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq31830 203 4e-47 seq336 154 2e-32 seq31807 122 1e-22 seq33781 105 8e-18 seq37228 93.3 5e-14 >seq31830 Length=311768 Score = 203 bits (224), Expect = 4e-47 Identities = 1017/1599 (64%), Gaps = 57/1599 (4%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556 ||||| ||||| ||||| |||||||| ||||||||| || ||||| | | | | | Sbjct 110116 GTTCAAGGACTGGGACTGGTCGATGAAGGCACCACGATCGGCAGCCATCTGCACAACGGT 110175 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 | || | ||| ||||||||||||||||||| ||||| || ||||||||| Sbjct 110176 GCGCT---GAGAAATCTCCCAGACAGTCTTGTACAGGGACTTGACGTCGGCGGGAATGTT 110232 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTC-G 109672 |||||| || || || |||| || | |||| ||| |||||| || || | Sbjct 110233 GGGGATGTTCTGGATGGA---ACCATTCTCGGCAATGATGCGATTCTTCATG-CTATCAG 110288 Query 109673 ACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCAC 109732 |||| ||||| | | ||||| | | || |||||| || || || | Sbjct 110289 ACCAAAGACCCATGTCAACAAGATCCTTGAGCAGCCAGGGGTTGACGACCTGGAACTCGC 110348 Query 109733 CAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGC 109792 | || || || || |||||||||| | |||||| || ||||| ||||| ||||||| Sbjct 110349 CGGCGAGCACACGACGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGC 110408 Query 109793 CTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGAC 109852 | ||||| || | || || ||||||||||| |||| |||||||||||| |||| | Sbjct 110409 CAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGACGC 110468 Query 109853 CCTTCGTCTTTACCCG-CTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTC 109911 | | ||| | | | ||| || || |||| || || | || || | | Sbjct 110469 CGTGTTGCTTGATCTGGCTCTT-CAGGTCGGCCCAGTCCCAAAGGTCAGTA------GGC 110521 Query 109912 TCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTC 109971 | | | |||||| || |||||| | ||||| | | || || |||| | | Sbjct 110522 TTGACGTTCCACATGTCGTATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATAGGTG 110581 Query 109972 TCGTACGACCCCTCAACCTCGGCCAACTCGGATGA-AGCCTCTAGTGCCGCATGATACAT 110030 ||| | || || ||| || | || | |||| | || || || || || || || Sbjct 110582 GAGTAGGGGCCTTCCTCCTGAGCGAGCTTGCATGACATGGTC-AGGGCAGCGTGGTAGAT 110640 Query 110031 AGTCTCAAAAATATGAGCATTCATGAGGCGA---GACTCTTCACAGTCGAAGGGAAGACC 110087 |||||||| || || || |||| | ||| | | || ||||| | | Sbjct 110641 GGTCTCAAAGATCTGC---TTGTTGAGCTCCTTGGCCTCAGGAGACTCAAAGGGCATGCG 110697 Query 110088 ACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCAT 110147 | || || |||| || | ||||| ||||| || |||||||| ||||| ||| Sbjct 110698 GAGAGCAAGGAAAGCATCAGCCAAGCCCTGGACACCAAGGCCAATGGGCCGATGGCGCAT 110757 Query 110148 GTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATT 110207 ||| | ||||| ||||||||| ||| |||||||| || ||||| || Sbjct 110758 GTTGCTGTTGCGAGCCTCGATGACGGGGTAATGGTTCACGTCGATGATCCTGTTGAGGTT 110817 Query 110208 CTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTT 110267 | | || || |||| | ||||| || | | | || || | | | Sbjct 110818 CCTGACGACGACCTGAGTGACCTGGTGGAGCTTCTTGAAGTCATACACGCCGTTGTTGTA 110877 Query 110268 ATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC 110327 || || || ||| || || | ||| || || ||||| || | | ||| || | Sbjct 110878 ATCAACGTAGGCGGGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGC 110937 Query 110328 GGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTG 110387 | ||| || | ||| || || |||| |||||| || |||| ||| | ||||||||| Sbjct 110938 CGAGTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTG 110997 Query 110388 ATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTG 110447 || ||| |||||| |||||| ||||||||| | ||| | || || || ||||| Sbjct 110998 GTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTG 111057 Query 110448 TGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT 110506 | || ||| | ||| | ||| | | || ||| | | || | ||| | |||| Sbjct 111058 AGCCTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGA-----TGGTCTTGCG-GCCCTT 111111 Query 110507 -----CCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAG 110561 ||| ||||||||| ||||||| ||||||| || | ||||| |||| ||| Sbjct 111112 GCCAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAG 111171 Query 110562 ACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCAT 110621 || || || ||| || | ||| | ||| | || || ||| || | |||||| Sbjct 111172 GCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCAT 111231 Query 110622 GAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACC 110681 ||| || || || ||||||| ||| ||| || || || ||| |||| || | || Sbjct 111232 GAAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCC 111291 Query 110682 TTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC 110741 ||||| ||| || || | || || | || ||| | ||||||||| || || |||| Sbjct 111292 GTGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGAT 111351 Query 110742 ------AGCGATGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATT 110795 |||| || | ||| | | | | |||||| ||| ||||| || ||| || Sbjct 111352 GGCAAAAGCGCCGGGACGCTT--GTTGCCGC-CCTGGTCAACGTAGCGCGCCGTGTTGTT 111408 Query 110796 GAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGA 110855 |||||| | ||||| || | || || | || || || || || ||| || Sbjct 111409 GAAGACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGA 111468 Query 110856 CTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTG 110915 | ||||||| ||| |||| | || |||||||||||| ||| ||| || Sbjct 111469 GCCAGTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCAT 111528 Query 110916 TGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTA 110974 ||||| ||| |||| || | || ||||| ||||| || |||| || ||| | Sbjct 111529 GGCACAGGTCT-TGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCA 111587 Query 110975 GAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCAT 111034 | ||||| || |||| ||||| ||||||| || || |||||||| ||||| | || | Sbjct 111588 GGAAGCAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGT 111647 Query 111035 GAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTC 111071 | ||| ||| ||| |||||| |||||| || || Sbjct 111648 GTGTGA--AGAATTTGCTGGACATGAGGTTGTACGTCTC 111684 >seq336 Length=177044 Score = 154 bits (170), Expect = 2e-32 Identities = 524/807 (65%), Gaps = 27/807 (3%) Strand=Plus/Minus Query 110280 GGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAA 110339 ||| || || | ||| || || ||||| || | | ||| || | | ||| || | Sbjct 111120 GGGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTACTCGAC 111061 Query 110340 AATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGA 110399 ||| || || |||| |||||| || |||| ||| | ||||||||| || ||| Sbjct 111060 AATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCG 111001 Query 110400 GTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAAT 110459 |||||| |||||| ||||||||| | ||| | || || || ||||| | || ||| | Sbjct 111000 GTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGAC 110941 Query 110460 GGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT-----CCTCCTC 110513 ||| | ||| | | || ||| | | || | ||| | |||| ||| ||| Sbjct 110940 GGCGTACCAAAGCTTCTGCGCCTTGA-----TGGTCTTGCG-GCCCTTGCCAGCCTTCTC 110887 Query 110514 GTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT 110573 |||||| ||||||| ||||||| || | ||||| |||| ||| || || Sbjct 110886 GTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTC 110827 Query 110574 GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGG 110633 || ||| || | ||| | ||| | || || ||| || | ||||||||| || || || Sbjct 110826 GTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCGGG 110767 Query 110634 AATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCG 110693 ||||||| ||| ||| || || || ||| |||| || | || ||||| ||| Sbjct 110766 GATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCG 110707 Query 110694 TAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC------AGCGAT 110747 || || | || || | || ||| | ||||||||| || || |||| |||| Sbjct 110706 GAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCGCC 110647 Query 110748 GGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAG 110807 || | ||| | | | | |||||| ||| ||||| || ||| |||||||| | || Sbjct 110646 GGGACGCTT--GTTGCCGC-CCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCGAAG 110590 Query 110808 CATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACG 110867 ||| || | || || | || || || || || ||| || | ||||||| Sbjct 110589 CATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTGGCACG 110530 Query 110868 AATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTG 110926 ||| |||| | || |||||||||||| ||| ||| || ||||| ||| Sbjct 110529 GATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCT- 110471 Query 110927 TGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAG 110986 |||| || | || ||||| ||||| ||| |||| || | | || ||||| || | Sbjct 110470 TGAGGGTGTCGTAGATACCTTCAATGCTATCATCCTTCATGTCGACCAGGAAGCAGGACG 110411 Query 110987 ACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGAC 111046 ||| ||||| | ||||| || || |||||||| ||||| | || || ||| ||| Sbjct 110410 ACAGCTGAGCCTGGGGCGTGCCAGCGTTGAAGAGGGTAGGAGAGGCGTGTGTGA--AGAA 110353 Query 111047 CTTG--GGACATCTTGTTGTATGTGTC 111071 ||| |||||| |||||| || || Sbjct 110352 TTTGTTGGACATGAGGTTGTACGTCTC 110326 >seq31807 Length=5160 Score = 122 bits (134), Expect = 1e-22 Identities = 410/634 (65%), Gaps = 21/634 (3%) Strand=Plus/Plus Query 110280 GGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAA 110339 ||| || || | ||| || || ||||| || | | ||| || | | ||| || | Sbjct 4483 GGGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTACTCGAC 4542 Query 110340 AATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGA 110399 ||| || || |||| |||||| || |||| ||| | ||||||||| || ||| Sbjct 4543 AATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCG 4602 Query 110400 GTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAAT 110459 |||||| |||||| ||||||||| | ||| | || || || ||||| | || ||| | Sbjct 4603 GTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGAC 4662 Query 110460 GGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT-----CCTCCTC 110513 ||| | ||| | | || ||| | | || | ||| | |||| ||| ||| Sbjct 4663 GGCGTACCAAAGCTTCTGCGCCTTGA-----TGGTCTTGCG-GCCCTTGCCAGCCTTCTC 4716 Query 110514 GTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT 110573 |||||| ||||||| ||||||| || | ||||| |||| ||| || || Sbjct 4717 GTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTC 4776 Query 110574 GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGG 110633 || ||| || | ||| | ||| | || || ||| || | ||||||||| || || || Sbjct 4777 GTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCGGG 4836 Query 110634 AATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCG 110693 ||||||| ||| ||| || || || ||| |||| || | || ||||| ||| Sbjct 4837 GATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCG 4896 Query 110694 TAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC------AGCGAT 110747 || || | || || | || ||| | ||||||||| || || |||| |||| Sbjct 4897 GAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCGCC 4956 Query 110748 GGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAG 110807 || | ||| | | | | |||||| ||| ||||| || ||| |||||||| | || Sbjct 4957 GGGACGCTT--GTTGCCGC-CCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCGAAG 5013 Query 110808 CATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACG 110867 ||| || | || || | || || || || || ||| || | ||||||| Sbjct 5014 CATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTGGCACG 5073 Query 110868 AATGTCGTGGATATGCATACCAATACCACCCGCC 110901 ||| |||| | || |||||||||||| ||| Sbjct 5074 GATGCGATGGACGTTCAGACCAATACCACCAGCC 5107 >seq33781 Length=620 Score = 105 bits (116), Expect = 8e-18 Identities = 183/260 (70%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CGGCAG 11797 || ||||| || ||| | || || || || |||||||| || || | | | || | Sbjct 620 AGGTCACGCACTCGCGAGGAACCGACGCCGACAAACATCTCCACAAACTCGGAACCGCTG 561 Query 11798 AACACTGAATGAAGGGAACATTAGACTCACCAGC-GATGGCTCGAGCGAGGAGAGTCTTA 11856 | | ||||| ||| |||||| |||||| || || | || || | ||||| || |||||| Sbjct 560 A-CGCTGAA-GAAAGGAACACCAGACTCGCCTGCCGTTGCCTTG-GCGAGCAGCGTCTTA 504 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916 |||||||| || | |||| |||| ||| |||||||| ||||||||||| | | Sbjct 503 CCCGTACCGGGGGGTCCAGACAGAATGGCACCACGGGGAATCTTGGCACCCAGGCGCTCG 444 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCG 11976 | ||||||||| ||| |||||| |||| |||| || || ||||||| ||| Sbjct 443 AACCGCTCAGGCGCCTTCAGGAAGCTGACAAACTCCATAATCTCAGCCTTGGCCTCGTCC 384 Query 11977 ATACCCTCAACATCGGTGAA 11996 || || | |||||| |||| Sbjct 383 ATGCCTGCCACATCGCTGAA 364 >seq37228 Length=14314 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 109751 GGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGG 109810 |||||||||| | |||||| || ||||| ||||| |||||||| ||||| || | || Sbjct 14259 GGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTAC 14200 Query 109811 AAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 || ||||||||||| |||| |||||||||||| |||| Sbjct 14199 TGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGA 14161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588693424039600