Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq31830 203 4e-47
seq336 154 2e-32
seq31807 122 1e-22
seq33781 105 8e-18
seq37228 93.3 5e-14
>seq31830
Length=311768
Score = 203 bits (224), Expect = 4e-47
Identities = 1017/1599 (64%), Gaps = 57/1599 (4%)
Strand=Plus/Plus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556
||||| ||||| ||||| |||||||| ||||||||| || ||||| | | | | |
Sbjct 110116 GTTCAAGGACTGGGACTGGTCGATGAAGGCACCACGATCGGCAGCCATCTGCACAACGGT 110175
Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616
| || | ||| ||||||||||||||||||| ||||| || |||||||||
Sbjct 110176 GCGCT---GAGAAATCTCCCAGACAGTCTTGTACAGGGACTTGACGTCGGCGGGAATGTT 110232
Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTC-G 109672
|||||| || || || |||| || | |||| ||| |||||| || || |
Sbjct 110233 GGGGATGTTCTGGATGGA---ACCATTCTCGGCAATGATGCGATTCTTCATG-CTATCAG 110288
Query 109673 ACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCAC 109732
|||| ||||| | | ||||| | | || |||||| || || || |
Sbjct 110289 ACCAAAGACCCATGTCAACAAGATCCTTGAGCAGCCAGGGGTTGACGACCTGGAACTCGC 110348
Query 109733 CAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGC 109792
| || || || || |||||||||| | |||||| || ||||| ||||| |||||||
Sbjct 110349 CGGCGAGCACACGACGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGC 110408
Query 109793 CTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGAC 109852
| ||||| || | || || ||||||||||| |||| |||||||||||| |||| |
Sbjct 110409 CAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGACGC 110468
Query 109853 CCTTCGTCTTTACCCG-CTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTC 109911
| | ||| | | | ||| || || |||| || || | || || | |
Sbjct 110469 CGTGTTGCTTGATCTGGCTCTT-CAGGTCGGCCCAGTCCCAAAGGTCAGTA------GGC 110521
Query 109912 TCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTC 109971
| | | |||||| || |||||| | ||||| | | || || |||| | |
Sbjct 110522 TTGACGTTCCACATGTCGTATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATAGGTG 110581
Query 109972 TCGTACGACCCCTCAACCTCGGCCAACTCGGATGA-AGCCTCTAGTGCCGCATGATACAT 110030
||| | || || ||| || | || | |||| | || || || || || || ||
Sbjct 110582 GAGTAGGGGCCTTCCTCCTGAGCGAGCTTGCATGACATGGTC-AGGGCAGCGTGGTAGAT 110640
Query 110031 AGTCTCAAAAATATGAGCATTCATGAGGCGA---GACTCTTCACAGTCGAAGGGAAGACC 110087
|||||||| || || || |||| | ||| | | || ||||| | |
Sbjct 110641 GGTCTCAAAGATCTGC---TTGTTGAGCTCCTTGGCCTCAGGAGACTCAAAGGGCATGCG 110697
Query 110088 ACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCAT 110147
| || || |||| || | ||||| ||||| || |||||||| ||||| |||
Sbjct 110698 GAGAGCAAGGAAAGCATCAGCCAAGCCCTGGACACCAAGGCCAATGGGCCGATGGCGCAT 110757
Query 110148 GTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATT 110207
||| | ||||| ||||||||| ||| |||||||| || ||||| ||
Sbjct 110758 GTTGCTGTTGCGAGCCTCGATGACGGGGTAATGGTTCACGTCGATGATCCTGTTGAGGTT 110817
Query 110208 CTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTT 110267
| | || || |||| | ||||| || | | | || || | | |
Sbjct 110818 CCTGACGACGACCTGAGTGACCTGGTGGAGCTTCTTGAAGTCATACACGCCGTTGTTGTA 110877
Query 110268 ATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC 110327
|| || || ||| || || | ||| || || ||||| || | | ||| || |
Sbjct 110878 ATCAACGTAGGCGGGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGC 110937
Query 110328 GGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTG 110387
| ||| || | ||| || || |||| |||||| || |||| ||| | |||||||||
Sbjct 110938 CGAGTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTG 110997
Query 110388 ATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTG 110447
|| ||| |||||| |||||| ||||||||| | ||| | || || || |||||
Sbjct 110998 GTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTG 111057
Query 110448 TGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT 110506
| || ||| | ||| | ||| | | || ||| | | || | ||| | ||||
Sbjct 111058 AGCCTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGA-----TGGTCTTGCG-GCCCTT 111111
Query 110507 -----CCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAG 110561
||| ||||||||| ||||||| ||||||| || | ||||| |||| |||
Sbjct 111112 GCCAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAG 111171
Query 110562 ACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCAT 110621
|| || || ||| || | ||| | ||| | || || ||| || | ||||||
Sbjct 111172 GCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCAT 111231
Query 110622 GAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACC 110681
||| || || || ||||||| ||| ||| || || || ||| |||| || | ||
Sbjct 111232 GAAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCC 111291
Query 110682 TTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC 110741
||||| ||| || || | || || | || ||| | ||||||||| || || ||||
Sbjct 111292 GTGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGAT 111351
Query 110742 ------AGCGATGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATT 110795
|||| || | ||| | | | | |||||| ||| ||||| || ||| ||
Sbjct 111352 GGCAAAAGCGCCGGGACGCTT--GTTGCCGC-CCTGGTCAACGTAGCGCGCCGTGTTGTT 111408
Query 110796 GAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGA 110855
|||||| | ||||| || | || || | || || || || || ||| ||
Sbjct 111409 GAAGACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGA 111468
Query 110856 CTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTG 110915
| ||||||| ||| |||| | || |||||||||||| ||| ||| ||
Sbjct 111469 GCCAGTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCAT 111528
Query 110916 TGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTA 110974
||||| ||| |||| || | || ||||| ||||| || |||| || ||| |
Sbjct 111529 GGCACAGGTCT-TGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCA 111587
Query 110975 GAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCAT 111034
| ||||| || |||| ||||| ||||||| || || |||||||| ||||| | || |
Sbjct 111588 GGAAGCAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGT 111647
Query 111035 GAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTC 111071
| ||| ||| ||| |||||| |||||| || ||
Sbjct 111648 GTGTGA--AGAATTTGCTGGACATGAGGTTGTACGTCTC 111684
>seq336
Length=177044
Score = 154 bits (170), Expect = 2e-32
Identities = 524/807 (65%), Gaps = 27/807 (3%)
Strand=Plus/Minus
Query 110280 GGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAA 110339
||| || || | ||| || || ||||| || | | ||| || | | ||| || |
Sbjct 111120 GGGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTACTCGAC 111061
Query 110340 AATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGA 110399
||| || || |||| |||||| || |||| ||| | ||||||||| || |||
Sbjct 111060 AATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCG 111001
Query 110400 GTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAAT 110459
|||||| |||||| ||||||||| | ||| | || || || ||||| | || ||| |
Sbjct 111000 GTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGAC 110941
Query 110460 GGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT-----CCTCCTC 110513
||| | ||| | | || ||| | | || | ||| | |||| ||| |||
Sbjct 110940 GGCGTACCAAAGCTTCTGCGCCTTGA-----TGGTCTTGCG-GCCCTTGCCAGCCTTCTC 110887
Query 110514 GTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT 110573
|||||| ||||||| ||||||| || | ||||| |||| ||| || ||
Sbjct 110886 GTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTC 110827
Query 110574 GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGG 110633
|| ||| || | ||| | ||| | || || ||| || | ||||||||| || || ||
Sbjct 110826 GTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCGGG 110767
Query 110634 AATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCG 110693
||||||| ||| ||| || || || ||| |||| || | || ||||| |||
Sbjct 110766 GATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCG 110707
Query 110694 TAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC------AGCGAT 110747
|| || | || || | || ||| | ||||||||| || || |||| ||||
Sbjct 110706 GAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCGCC 110647
Query 110748 GGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAG 110807
|| | ||| | | | | |||||| ||| ||||| || ||| |||||||| | ||
Sbjct 110646 GGGACGCTT--GTTGCCGC-CCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCGAAG 110590
Query 110808 CATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACG 110867
||| || | || || | || || || || || ||| || | |||||||
Sbjct 110589 CATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTGGCACG 110530
Query 110868 AATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTG 110926
||| |||| | || |||||||||||| ||| ||| || ||||| |||
Sbjct 110529 GATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCT- 110471
Query 110927 TGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAG 110986
|||| || | || ||||| ||||| ||| |||| || | | || ||||| || |
Sbjct 110470 TGAGGGTGTCGTAGATACCTTCAATGCTATCATCCTTCATGTCGACCAGGAAGCAGGACG 110411
Query 110987 ACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGAC 111046
||| ||||| | ||||| || || |||||||| ||||| | || || ||| |||
Sbjct 110410 ACAGCTGAGCCTGGGGCGTGCCAGCGTTGAAGAGGGTAGGAGAGGCGTGTGTGA--AGAA 110353
Query 111047 CTTG--GGACATCTTGTTGTATGTGTC 111071
||| |||||| |||||| || ||
Sbjct 110352 TTTGTTGGACATGAGGTTGTACGTCTC 110326
>seq31807
Length=5160
Score = 122 bits (134), Expect = 1e-22
Identities = 410/634 (65%), Gaps = 21/634 (3%)
Strand=Plus/Plus
Query 110280 GGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAA 110339
||| || || | ||| || || ||||| || | | ||| || | | ||| || |
Sbjct 4483 GGGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTACTCGAC 4542
Query 110340 AATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGA 110399
||| || || |||| |||||| || |||| ||| | ||||||||| || |||
Sbjct 4543 AATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCG 4602
Query 110400 GTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAAT 110459
|||||| |||||| ||||||||| | ||| | || || || ||||| | || ||| |
Sbjct 4603 GTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGAC 4662
Query 110460 GGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT-----CCTCCTC 110513
||| | ||| | | || ||| | | || | ||| | |||| ||| |||
Sbjct 4663 GGCGTACCAAAGCTTCTGCGCCTTGA-----TGGTCTTGCG-GCCCTTGCCAGCCTTCTC 4716
Query 110514 GTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT 110573
|||||| ||||||| ||||||| || | ||||| |||| ||| || ||
Sbjct 4717 GTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTC 4776
Query 110574 GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGG 110633
|| ||| || | ||| | ||| | || || ||| || | ||||||||| || || ||
Sbjct 4777 GTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCGGG 4836
Query 110634 AATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCG 110693
||||||| ||| ||| || || || ||| |||| || | || ||||| |||
Sbjct 4837 GATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCG 4896
Query 110694 TAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC------AGCGAT 110747
|| || | || || | || ||| | ||||||||| || || |||| ||||
Sbjct 4897 GAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCGCC 4956
Query 110748 GGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAG 110807
|| | ||| | | | | |||||| ||| ||||| || ||| |||||||| | ||
Sbjct 4957 GGGACGCTT--GTTGCCGC-CCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCGAAG 5013
Query 110808 CATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACG 110867
||| || | || || | || || || || || ||| || | |||||||
Sbjct 5014 CATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTGGCACG 5073
Query 110868 AATGTCGTGGATATGCATACCAATACCACCCGCC 110901
||| |||| | || |||||||||||| |||
Sbjct 5074 GATGCGATGGACGTTCAGACCAATACCACCAGCC 5107
>seq33781
Length=620
Score = 105 bits (116), Expect = 8e-18
Identities = 183/260 (70%), Gaps = 6/260 (2%)
Strand=Plus/Minus
Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CGGCAG 11797
|| ||||| || ||| | || || || || |||||||| || || | | | || |
Sbjct 620 AGGTCACGCACTCGCGAGGAACCGACGCCGACAAACATCTCCACAAACTCGGAACCGCTG 561
Query 11798 AACACTGAATGAAGGGAACATTAGACTCACCAGC-GATGGCTCGAGCGAGGAGAGTCTTA 11856
| | ||||| ||| |||||| |||||| || || | || || | ||||| || ||||||
Sbjct 560 A-CGCTGAA-GAAAGGAACACCAGACTCGCCTGCCGTTGCCTTG-GCGAGCAGCGTCTTA 504
Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916
|||||||| || | |||| |||| ||| |||||||| ||||||||||| | |
Sbjct 503 CCCGTACCGGGGGGTCCAGACAGAATGGCACCACGGGGAATCTTGGCACCCAGGCGCTCG 444
Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCG 11976
| ||||||||| ||| |||||| |||| |||| || || ||||||| |||
Sbjct 443 AACCGCTCAGGCGCCTTCAGGAAGCTGACAAACTCCATAATCTCAGCCTTGGCCTCGTCC 384
Query 11977 ATACCCTCAACATCGGTGAA 11996
|| || | |||||| ||||
Sbjct 383 ATGCCTGCCACATCGCTGAA 364
>seq37228
Length=14314
Score = 93.3 bits (102), Expect = 5e-14
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 109751 GGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGG 109810
|||||||||| | |||||| || ||||| ||||| |||||||| ||||| || | ||
Sbjct 14259 GGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTAC 14200
Query 109811 AAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849
|| ||||||||||| |||| |||||||||||| ||||
Sbjct 14199 TGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGA 14161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588693424039600
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