Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq8335 167 5e-36
seq20113 154 3e-32
seq35245 129 1e-24
seq2224 120 7e-22
seq1514 118 2e-21
seq34290 84.2 5e-11
seq20001 84.2 5e-11
>seq8335
Length=118861
Score = 167 bits (184), Expect = 5e-36
Identities = 163/210 (78%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| ||||||||||||||||| || ||||| ||||| |||| | ||| | ||||| ||
Sbjct 14716 AACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTC 14657
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|||||||| || |||||||| || || |||||||| |||||||| || || ||||| ||
Sbjct 14656 AAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTG 14597
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||||||||| ||||||||||| ||| ||||| ||||| || | |||||
Sbjct 14596 AATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTT 14537
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| || || || || | |||||
Sbjct 14536 GCCGGTCAGCGTCTTGACAAAGATCTGCAT 14507
Score = 105 bits (116), Expect = 1e-17
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || || ||||| || || || ||||| || | || || | || || || ||||||
Sbjct 14937 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCAAGCTGC 14878
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || ||||| || || || ||||| || ||||||||||| || |||||||| || ||
Sbjct 14877 TTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTG 14818
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| || || || || ||||| || ||| ||||| | || | ||||| || ||
Sbjct 14817 GACTTCACATTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTACCGGTG 14758
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | ||||||
Sbjct 14757 AGCGTCTTGACGAAGATTTGCAT 14735
>seq20113
Length=64481
Score = 154 bits (170), Expect = 3e-32
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| ||||||||||| ||||| || ||||| ||||| |||| ||||| | ||||| ||
Sbjct 11165 AACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTC 11106
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|||||||| || || ||||| || || |||||||| |||||||| || || ||||| ||
Sbjct 11105 AAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTG 11046
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||||||||| || |||||||| ||| || || || || || | |||||
Sbjct 11045 AATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTT 10986
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| ||| || || || | |||||
Sbjct 10985 GCCGGTCAGAGTCTTGACAAAGATCTGCAT 10956
Score = 118 bits (130), Expect = 2e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || || ||||| || || || ||||| || | || || | ||||| |||||||||
Sbjct 11386 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCGAGCTGC 11327
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || ||||| || || || |||||||| ||||| || || || |||||||| || ||
Sbjct 11326 TTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTG 11267
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||||||||| || || ||||| || ||| ||||| | || | ||||| || ||
Sbjct 11266 GACTTGACGTTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTACCGGTG 11207
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | ||||||
Sbjct 11206 AGTGTCTTGACGAAGATTTGCAT 11184
>seq35245
Length=420
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||||||||| || || || ||||| |||| |||||| | ||||| ||
Sbjct 130 ACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCA 189
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || || || || |||||||| || || ||||| || ||||| ||
Sbjct 190 AGCTGCTTGCCAGC---NATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 246
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || |||||||| || ||||| |||||||| | |||||
Sbjct 247 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 306
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 307 CCCGTGAGGGTCTTGACGAAGATCTGCAT 335
>seq2224
Length=467227
Score = 120 bits (132), Expect = 7e-22
Identities = 126/166 (76%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| |||| ||||| | ||||| ||||||||||| || ||||| ||
Sbjct 102758 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 102699
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
|| || |||||||| || || ||||| || ||||| || || || |||||| || |||
Sbjct 102698 AGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCA 102639
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|||||||| || ||||| |||||||| | ||||| || ||||
Sbjct 102638 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCA 102593
>seq1514
Length=10590
Score = 118 bits (130), Expect = 2e-21
Identities = 128/170 (75%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 194947 GACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCG 195006
||||| || || || ||||| |||| || || | ||||| || |||||||| || |||
Sbjct 5777 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCG 5718
Query 195007 AAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACG 195066
||||| || || |||||||| ||||| ||||| || ||||| || || || ||| |||
Sbjct 5717 AAGATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACG 5658
Query 195067 TTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|| || ||||||||||| || || |||||||| | ||||| || ||
Sbjct 5657 TTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 5608
>seq34290
Length=516
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/88 (82%), Gaps = 6/88 (7%)
Strand=Plus/Plus
Query 289736 CGAGGTCTCCAACTCTTCTGAATCTGAG---GAAGAGGAGAAGCCCAAGAAGAAGCCTG- 289791
|||| |||| |||||||||| |||||| || ||||||||||||||||||||| |||
Sbjct 373 CGAGTCCTCCGACTCTTCTGACTCTGAGTCTGAGGAGGAGAAGCCCAAGAAGAAGGCTGC 432
Query 289792 --TCGCCAAGAAGGCCCCTGTCAAGAAG 289817
|| |||||||||| ||| |||||||
Sbjct 433 CAACGGCAAGAAGGCCGCTGCCAAGAAG 460
>seq20001
Length=358984
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/88 (82%), Gaps = 6/88 (7%)
Strand=Plus/Plus
Query 289736 CGAGGTCTCCAACTCTTCTGAATCTGAG---GAAGAGGAGAAGCCCAAGAAGAAGCCTG- 289791
|||| |||| |||||||||| |||||| || ||||||||||||||||||||| |||
Sbjct 207564 CGAGTCCTCCGACTCTTCTGACTCTGAGTCTGAGGAGGAGAAGCCCAAGAAGAAGGCTGC 207623
Query 289792 --TCGCCAAGAAGGCCCCTGTCAAGAAG 289817
|| |||||||||| ||| |||||||
Sbjct 207624 CAACGGCAAGAAGGCCGCTGCCAAGAAG 207651
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1108935990926994
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |