Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq8335 167 5e-36 seq20113 154 3e-32 seq35245 129 1e-24 seq2224 120 7e-22 seq1514 118 2e-21 seq34290 84.2 5e-11 seq20001 84.2 5e-11 >seq8335 Length=118861 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||||||||||||||| || ||||| ||||| |||| | ||| | ||||| || Sbjct 14716 AACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTC 14657 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| || || |||||||| |||||||| || || ||||| || Sbjct 14656 AAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTG 14597 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||||||||| ||||||||||| ||| ||||| ||||| || | ||||| Sbjct 14596 AATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTT 14537 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 14536 GCCGGTCAGCGTCTTGACAAAGATCTGCAT 14507 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || ||||| || || || ||||| || | || || | || || || |||||| Sbjct 14937 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCAAGCTGC 14878 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || || || ||||| || ||||||||||| || |||||||| || || Sbjct 14877 TTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTG 14818 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || || || ||||| || ||| ||||| | || | ||||| || || Sbjct 14817 GACTTCACATTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTACCGGTG 14758 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 14757 AGCGTCTTGACGAAGATTTGCAT 14735 >seq20113 Length=64481 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||||||||| ||||| || ||||| ||||| |||| ||||| | ||||| || Sbjct 11165 AACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTC 11106 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || || |||||||| |||||||| || || ||||| || Sbjct 11105 AAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTG 11046 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||||||||| || |||||||| ||| || || || || || | ||||| Sbjct 11045 AATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTT 10986 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || || || | ||||| Sbjct 10985 GCCGGTCAGAGTCTTGACAAAGATCTGCAT 10956 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || ||||| || || || ||||| || | || || | ||||| ||||||||| Sbjct 11386 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCGAGCTGC 11327 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || || || |||||||| ||||| || || || |||||||| || || Sbjct 11326 TTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTG 11267 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||| || || ||||| || ||| ||||| | || | ||||| || || Sbjct 11266 GACTTGACGTTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTACCGGTG 11207 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 11206 AGTGTCTTGACGAAGATTTGCAT 11184 >seq35245 Length=420 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| |||| |||||| | ||||| || Sbjct 130 ACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCA 189 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || || |||||||| || || ||||| || ||||| || Sbjct 190 AGCTGCTTGCCAGC---NATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 246 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| || ||||| |||||||| | ||||| Sbjct 247 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 306 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 307 CCCGTGAGGGTCTTGACGAAGATCTGCAT 335 >seq2224 Length=467227 Score = 120 bits (132), Expect = 7e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| ||||| | ||||| ||||||||||| || ||||| || Sbjct 102758 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 102699 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || |||||||| || || ||||| || ||||| || || || |||||| || ||| Sbjct 102698 AGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCA 102639 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||||| || ||||| |||||||| | ||||| || |||| Sbjct 102638 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCA 102593 >seq1514 Length=10590 Score = 118 bits (130), Expect = 2e-21 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 194947 GACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCG 195006 ||||| || || || ||||| |||| || || | ||||| || |||||||| || ||| Sbjct 5777 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCG 5718 Query 195007 AAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACG 195066 ||||| || || |||||||| ||||| ||||| || ||||| || || || ||| ||| Sbjct 5717 AAGATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACG 5658 Query 195067 TTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || ||||||||||| || || |||||||| | ||||| || || Sbjct 5657 TTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 5608 >seq34290 Length=516 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 289736 CGAGGTCTCCAACTCTTCTGAATCTGAG---GAAGAGGAGAAGCCCAAGAAGAAGCCTG- 289791 |||| |||| |||||||||| |||||| || ||||||||||||||||||||| ||| Sbjct 373 CGAGTCCTCCGACTCTTCTGACTCTGAGTCTGAGGAGGAGAAGCCCAAGAAGAAGGCTGC 432 Query 289792 --TCGCCAAGAAGGCCCCTGTCAAGAAG 289817 || |||||||||| ||| ||||||| Sbjct 433 CAACGGCAAGAAGGCCGCTGCCAAGAAG 460 >seq20001 Length=358984 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 289736 CGAGGTCTCCAACTCTTCTGAATCTGAG---GAAGAGGAGAAGCCCAAGAAGAAGCCTG- 289791 |||| |||| |||||||||| |||||| || ||||||||||||||||||||| ||| Sbjct 207564 CGAGTCCTCCGACTCTTCTGACTCTGAGTCTGAGGAGGAGAAGCCCAAGAAGAAGGCTGC 207623 Query 289792 --TCGCCAAGAAGGCCCCTGTCAAGAAG 289817 || |||||||||| ||| ||||||| Sbjct 207624 CAACGGCAAGAAGGCCGCTGCCAAGAAG 207651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108935990926994