Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq20113 107 1e-18 seq8335 93.3 3e-14 >seq20113 Length=64481 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || || | || |||| || ||||| ||||| ||||| Sbjct 11146 TCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAAG 11087 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || ||||| | || | ||||||||||| |||||| |||||| Sbjct 11086 ATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 11027 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| |||| || ||||| || || || |||||||| ||| Sbjct 11026 TCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACA 10967 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 10966 AAGATCTGCATA 10955 >seq8335 Length=118861 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| ||| || ||||||||||| ||||| || | | || |||| || Sbjct 14716 AACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTC 14657 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||| || || || || || || ||||| | || | ||||||||||| Sbjct 14656 AAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTG 14597 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||||| |||||| | || | || | ||| || || | || ||||| || Sbjct 14596 AATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTT 14537 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| ||||||||||||||| Sbjct 14536 GCCGGTCAGCGTCTTGACAAAGATCTGCATA 14506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324481742691696