Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq669 109 4e-19
>seq669
Length=171934
Score = 109 bits (120), Expect = 4e-19
Identities = 267/400 (67%), Gaps = 6/400 (2%)
Strand=Plus/Plus
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 30048
|||||||||||| | ||||||| || || || ||||| || || |||
Sbjct 135416 ACGTAAAACTGAGCAAACATGTGGCAGGGCGGCAGCGCCATCTTCTTCAGGTGCGCCGGG 135475
Query 30049 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 30108
||||| |||| | ||||||||||| || | || ||| || ||| || ||
Sbjct 135476 TTCCATGCGCTGAGGATGATGCGCCGATCGTACGGATTGGTCTTGAGCTTGTGGACAATC 135535
Query 30109 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCT 30168
| | |||||| || || || |||| |||||| | | || || |||||| ||
Sbjct 135536 TCTGCCAGCTGGTCGACACCTTGACCCGTGTAGTCCGTCTTCGCATCAACGTACTCGGCA 135595
Query 30169 CCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG 30228
||||| |||| ||| ||||| ||||| || || || ||||| || | || | |||| |
Sbjct 135596 CCGAAGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACCTCGCGGTGCGAG 135655
Query 30229 AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC 30288
| ||| |||| | || || | || |||||| ||||||||||||| | ||| |
Sbjct 135656 AGTCCCACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCCGCC 135715
Query 30289 TCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGAC 30347
||| ||| | |||| ||| |||| | |||||||||| ||||| | |||||
Sbjct 135716 TCGCTCAGCGGTATGGACGACGTGCTGCCCTGT-ACGAACCACAAAAGCTCGGCGACGAC 135774
Query 30348 GGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 30385
||| | || ||||| | ||| ||||| || |||||||
Sbjct 135775 GGC--GCGAAGGAAGACGCGCTTTGTCGTCAGCAGGGGAA 135812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408426456603686
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |