Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq669 109 4e-19 >seq669 Length=171934 Score = 109 bits (120), Expect = 4e-19 Identities = 267/400 (67%), Gaps = 6/400 (2%) Strand=Plus/Plus Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 30048 |||||||||||| | ||||||| || || || ||||| || || ||| Sbjct 135416 ACGTAAAACTGAGCAAACATGTGGCAGGGCGGCAGCGCCATCTTCTTCAGGTGCGCCGGG 135475 Query 30049 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 30108 ||||| |||| | ||||||||||| || | || ||| || ||| || || Sbjct 135476 TTCCATGCGCTGAGGATGATGCGCCGATCGTACGGATTGGTCTTGAGCTTGTGGACAATC 135535 Query 30109 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCT 30168 | | |||||| || || || |||| |||||| | | || || |||||| || Sbjct 135536 TCTGCCAGCTGGTCGACACCTTGACCCGTGTAGTCCGTCTTCGCATCAACGTACTCGGCA 135595 Query 30169 CCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG 30228 ||||| |||| ||| ||||| ||||| || || || ||||| || | || | |||| | Sbjct 135596 CCGAAGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACCTCGCGGTGCGAG 135655 Query 30229 AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC 30288 | ||| |||| | || || | || |||||| ||||||||||||| | ||| | Sbjct 135656 AGTCCCACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCCGCC 135715 Query 30289 TCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGAC 30347 ||| ||| | |||| ||| |||| | |||||||||| ||||| | ||||| Sbjct 135716 TCGCTCAGCGGTATGGACGACGTGCTGCCCTGT-ACGAACCACAAAAGCTCGGCGACGAC 135774 Query 30348 GGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 ||| | || ||||| | ||| ||||| || ||||||| Sbjct 135775 GGC--GCGAAGGAAGACGCGCTTTGTCGTCAGCAGGGGAA 135812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408426456603686