Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq20113 86.0 5e-12
seq3335 86.0 5e-12
seq8335 84.2 2e-11
>seq20113
Length=64481
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || ||||| ||||| || || ||| | ||| | || || | |||||| || |||||
Sbjct 11147 CTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAA 11088
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| || |||||||| || | |||| ||||||||||| |||||| || ||
Sbjct 11087 GATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTT 11028
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || || | ||| ||||| | || || || || || |||| ||| || ||
Sbjct 11027 GTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGAC 10968
Query 48755 AAAAATCTGCAT 48766
||| ||||||||
Sbjct 10967 AAAGATCTGCAT 10956
>seq3335
Length=453419
Score = 86.0 bits (94), Expect = 5e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 9106 TCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTA 9165
|| |||| | ||| ||||||| ||||||| || |||||||||| | || |
Sbjct 234248 TCACCCTCAGCCACCGCAAAGTCGGTGTCGGCGTGGTTGAACAGCAGGATCTTGACCTGG 234189
Query 9166 CCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGT 9225
|| | ||| || |||| || || ||||| ||| |||||||||||||||| || ||
Sbjct 234188 CCGCGGTAGTCGGCATCAATGACGCCAGCGCCCGTGTCGATGAAGTGCTTGGAGGCGAGG 234129
Query 9226 CCAGAGCGGGGCGCGATTCGACCGT 9250
||||||||||| ||||| || ||||
Sbjct 234128 CCAGAGCGGGGGGCGATGCGGCCGT 234104
>seq8335
Length=118861
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||||||| || || ||| || || || ||||| ||||| || | || |||| ||
Sbjct 14943 ACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCA 14884
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
| |||||| || || || ||||| ||||||||||| | |||| ||||||||||||
Sbjct 14883 AGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTC 14828
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380759404771386
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |