Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq20113 86.0 5e-12 seq3335 86.0 5e-12 seq8335 84.2 2e-11 >seq20113 Length=64481 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| ||||| || || ||| | ||| | || || | |||||| || ||||| Sbjct 11147 CTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAA 11088 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || |||||||| || | |||| ||||||||||| |||||| || || Sbjct 11087 GATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTT 11028 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||| ||||| | || || || || || |||| ||| || || Sbjct 11027 GTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGAC 10968 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 10967 AAAGATCTGCAT 10956 >seq3335 Length=453419 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 9106 TCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTA 9165 || |||| | ||| ||||||| ||||||| || |||||||||| | || | Sbjct 234248 TCACCCTCAGCCACCGCAAAGTCGGTGTCGGCGTGGTTGAACAGCAGGATCTTGACCTGG 234189 Query 9166 CCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGT 9225 || | ||| || |||| || || ||||| ||| |||||||||||||||| || || Sbjct 234188 CCGCGGTAGTCGGCATCAATGACGCCAGCGCCCGTGTCGATGAAGTGCTTGGAGGCGAGG 234129 Query 9226 CCAGAGCGGGGCGCGATTCGACCGT 9250 ||||||||||| ||||| || |||| Sbjct 234128 CCAGAGCGGGGGGCGATGCGGCCGT 234104 >seq8335 Length=118861 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| || || || ||||| ||||| || | || |||| || Sbjct 14943 ACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCA 14884 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 | |||||| || || || ||||| ||||||||||| | |||| |||||||||||| Sbjct 14883 AGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTC 14828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380759404771386