Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq8335 102 5e-16 seq20113 91.5 1e-12 >seq8335 Length=118861 Score = 102 bits (112), Expect = 5e-16 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || ||||| ||||| ||||| ||||| || || |||||||| |||||||| || |||||| Sbjct 14889 TCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTG 14830 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 ||||| ||||| || ||| || || || || | || | | || ||| || || Sbjct 14829 TCTTGGATCTTGGACTTCACATTGTCGATCGTGTCGGATGATTCGACTTCCAA-TGTGAT 14771 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| ||||||||||| ||||| ||||| ||||| Sbjct 14770 AGTCTTACCGGTGAGCGTCTTGACGAAGATTTG 14738 >seq20113 Length=64481 Score = 91.5 bits (100), Expect = 1e-12 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||| ||||| ||||| || || ||||| || ||||| || || ||||| Sbjct 11339 ATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTT 11280 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 |||||| ||||| ||||| || || || || | || | | || ||| || | Sbjct 11279 GTCTTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGATGATTCGACTTCCAA-TGTGA 11221 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| ||||||||||| ||||| ||||| ||||| Sbjct 11220 TAGTCTTACCGGTGAGTGTCTTGACGAAGATTTG 11187 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| || || ||||| || || || || || || || | ||||| Sbjct 11177 ACGAAGGCGGAGAACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 11118 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| ||||| |||||||||||||| || || || ||||| || |||||||| || Sbjct 11117 ACGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACC 11058 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| |||||||| ||||| || || || || | | | || || | Sbjct 11057 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAA-CCTCGA 10999 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || ||||| |||||||| || || || || Sbjct 10998 GAGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTG 10959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266532809790536