Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq31830 205 1e-47 seq336 165 1e-35 seq31807 129 7e-25 seq7069 82.4 9e-11 >seq31830 Length=311768 Score = 205 bits (226), Expect = 1e-47 Identities = 934/1463 (64%), Gaps = 35/1463 (2%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGCATCCTCA 75203 |||||||| |||| ||||| ||| |||||| |||| ||| || |||| | Sbjct 111813 TACTTTGGCTTCAAGACCCTGGAGCGTTCCTATCTCCTCAA--GCTTGACGGCAAGATTG 111756 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 || ||| ||| ||||| | ||||| || | |||| ||| || || || ||| Sbjct 111755 CCGAGCGCCCGCAGCACATGATTATGCGTGTTTCCGTCGGTATCTGGGGAGACAACGTTG 111696 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACC 75321 | |||| | ||||| ||| || |||||| || | | |||| |||||| | || Sbjct 111695 AGCGTGTCATTGAGACGTACAACCTCATGTCC--AGCAAATTCTTCACACACGCATCTCC 111638 Query 75322 AACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAA 75381 ||||||||||| ||||| || || | ||| |||| |||||||| | | || Sbjct 111637 TACCCTCTTCAACGCTGGCACGCCTCAGGCTCAGCTGTCGTCCTGCTTCCTGGTTGACAT 111578 Query 75382 CAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAA 75441 ||||| ||| || | |||||||| | || || | | ||||| ||||| || Sbjct 111577 GAAGGATGACAGCATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAA 111518 Query 75442 GTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCG 75501 | |||||| |||||||| || || ||||| | | |||| | ||| ||| Sbjct 111517 GATGGCTGGTGGTATTGGTCTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGC 111458 Query 75502 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561 || || || || ||| | || || | || ||||||||||| || ||| ||| || Sbjct 111457 CGGCACCAACGGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGC 111398 Query 75562 GCGCTATGTAAATCA-AGCGG-----GGCGTCGCAAGGGGTCCATCGCGGTCTACTTGGA 75615 |||||| || | || |||| ||||| | || | | || ||||| | || Sbjct 111397 GCGCTACGTTGACCAGGGCGGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGA 111341 Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGA 75675 |||||||| || ||| || | ||||||||||| | || ||||| || | || || Sbjct 111340 GCCATGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGA 111281 Query 75676 GGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735 || ||| | | |||||||| || ||||||| || || || ||||||||||| || Sbjct 111280 GGTTCGCGCTCGCGATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGT 111221 Query 75736 TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGC 75795 ||| || || | ||| |||| | || || || || || || || | ||| Sbjct 111220 CGAGAAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTG 111161 Query 75796 GGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGC--CAA 75852 ||||| |||||||| ||| | ||| ||||| || ||| || || || ||| Sbjct 111160 CTACGGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAA 111101 Query 75853 TGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTG 75911 ||| | | || ||| || | ||||| | || | ||| | | ||||| ||||| | Sbjct 111100 ---GACCAT-CAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCG 111045 Query 75912 GAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGG 75971 | | || | ||||| ||||||||| || ||| ||||| ||||| ||||| | | Sbjct 111044 GCAACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTG 110985 Query 75972 GAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGA 76031 | || || ||||| || || ||||| || ||| | |||||| | | |||||| Sbjct 110984 GTACCATTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGG 110925 Query 76032 CGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCA 76091 || || ||||| |||| || | ||||| || || || || | | | || Sbjct 110924 TTGCCGTCTGCAACCTGGCCTCTCTGGCCCTGCCCGCCTACGTTGATTACAACAACGGCG 110865 Query 76092 CTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAG 76151 | ||| | | || || || | |||| || | || || || || ||| | Sbjct 110864 TGTATGACTTCAAGAAGCTCCACCAGGTCACTCAGGTCGTCGTCAGGAACCTCAACAGGA 110805 Query 76152 TCATTGACAGAAATTTTTATCCCG---TTGAGACTGCGCGAAAGTCTAATATGCGACACA 76208 |||| ||| || ||| |||| | ||| || ||| | || || ||||| || Sbjct 110804 TCATCGACGTGAACCATTACCCCGTCATCGAGGCT-CGCAACAG--CAACATGCGCCATC 110748 Query 76209 GACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCAT 76268 | || ||||| | ||||| || || | || |||| || || |||| | | Sbjct 110747 GGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGCTTTCCTTGCTCTCCGCATGCCCT 110688 Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCAT 76328 |||| || ||| ||||||||| | || | |||||||| ||||| || ||||| Sbjct 110687 TTGAGTCTCCTGAGGCCAAGGAGCTCAACAAGCAGATCTTTGAGACCATCTACCACGCTG 110628 Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTT 76388 ||||| | || | | ||| | | |||| |||| || | |||||| | Sbjct 110627 CCCTGACCATGTCATGCAAGCTCGCTCAGGAGGAAGGCCCCTACTCCACCTATGAGGGCT 110568 Query 76389 CTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC- 76447 | |||| ||||| || | ||||| | || |||| |||| || || || | || | | Sbjct 110567 CGCCCGTCTCCCAGGGTATCCTTCAATACGACATGT-GGAACGTCAAGCCTA-CTGACCT 110510 Query 76448 -TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 76506 | ||||||| | || ||| | |||||| | | || | |||||||||||| | Sbjct 110509 TTGGGACTGGGCCGACCTGAAGAGCCAGATCAAGCAACACGGCGTCCGTAACAGTCTTCT 110450 Query 76507 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 76566 |||| || ||||| || ||| ||| | || ||| | || || || || ||||| || Sbjct 110449 CGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGCTTCGA 110390 Query 76567 ACCATACACAACAAACATCTACC 76589 || ||||| | |||||||||| Sbjct 110389 GCCTTACACGTCCAACATCTACC 110367 >seq336 Length=177044 Score = 165 bits (182), Expect = 1e-35 Identities = 560/865 (65%), Gaps = 17/865 (2%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| | ||||| || | | || ||| || || || |||| ||| Sbjct 110262 CCCGCAGCACATGATTATGCGTGTGTCCGTTGGTATCTGGGGAGACAACGTTGAGCGTGT 110321 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | | ||||| ||| || |||||| | | |||| ||||| | || |||||||| Sbjct 110322 CATTGAGACGTACAACCTCATGTCCAACAAATTCTTCACACACGCCTCTCCTACCCTCTT 110381 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| ||||| || || | ||| |||| |||||||| ||| || ||||| || Sbjct 110382 CAACGCTGGCACGCCCCAGGCTCAGCTGTCGTCCTGCTTCCTGGTCGACATGAAGGATGA 110441 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 || | |||||||| | || || | | ||||| ||||| ||| |||||| Sbjct 110442 TAGCATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGG 110501 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 |||||||| || || ||||| | | |||| | ||| ||| || || || Sbjct 110502 TGGTATTGGTCTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCACCAA 110561 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 || ||| | || || | || ||||||||||| || ||| ||| |||||||| || Sbjct 110562 CGGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGT 110621 Query 75571 AAATCA-AGCGG-----GGCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCA 75624 | || |||| ||||| | || | | || ||||| | || |||||||| Sbjct 110622 TGACCAGGGCGGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGAGCCATGGCA 110678 Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 || ||| || | ||||||||||| | || ||||| || | || |||| ||| Sbjct 110679 CGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGC 110738 Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 | | |||||||| || ||||||| || || || ||||||||||| || ||| || Sbjct 110739 TCGCGATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAA 110798 Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGA 75804 || | ||| |||| | || || || || || || || | ||| ||||| Sbjct 110799 CGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTACGGTGA 110858 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGC--CAATGCGACTGT 75861 |||||||| ||| | ||| ||||| || ||| || || || ||| ||| | Sbjct 110859 CGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAA---GACCAT 110915 Query 75862 ACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920 | || ||| || | ||||| | || | ||| | | ||||| ||||| || | || | Sbjct 110916 -CAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCT 110974 Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 ||||| ||||||||| || ||| ||||| ||||| ||||| | || || || Sbjct 110975 TCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTC 111034 Query 75981 AGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTT 76040 ||||| || || ||||| || ||| | |||||| | | |||||| || || | Sbjct 111035 GCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCGTCT 111094 Query 76041 GCAATTTGGCATCAATCGCCCTTCC 76065 |||| |||| || | ||||| || Sbjct 111095 GCAACCTGGCCTCTCTGGCCCTGCC 111119 >seq31807 Length=5160 Score = 129 bits (142), Expect = 7e-25 Identities = 438/675 (65%), Gaps = 17/675 (3%) Strand=Plus/Minus Query 75401 GGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGG 75460 |||||||| | || || | | ||||| ||||| ||| |||||| |||||||| Sbjct 5151 GGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGT 5092 Query 75461 ATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCA 75520 || || ||||| | | |||| | ||| ||| || || || || ||| Sbjct 5091 CTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCACCAACGGCACTTCA 5032 Query 75521 GATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCA-AGC 75579 | || || | || ||||||||||| || ||| ||| |||||||| || | || || Sbjct 5031 AACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGC 4972 Query 75580 GG-----GGCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATC 75634 || ||||| | || | | || ||||| | || |||||||| || ||| || Sbjct 4971 GGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTC 4915 Query 75635 ATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTC 75694 | ||||||||||| | || ||||| || | || |||| ||| | | |||||| Sbjct 4914 TTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCTCGCGATCTC 4855 Query 75695 TTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGG 75754 || || ||||||| || || || ||||||||||| || ||| || || | ||| Sbjct 4854 TTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACTGG 4795 Query 75755 TCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAA 75814 |||| | || || || || || || || | ||| ||||| |||||||| Sbjct 4794 ACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTACGGTGACGAGTTTGAG 4735 Query 75815 GCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGC--CAATGCGACTGTACCAGCCGCC 75871 ||| | ||| ||||| || ||| || || || ||| ||| | | || ||| Sbjct 4734 GCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAA---GACCAT-CAAGGCGCA 4679 Query 75872 GATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTA 75930 || | ||||| | || | ||| | | ||||| ||||| || | || | ||||| || Sbjct 4678 GAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTCTA 4619 Query 75931 CAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAA 75990 ||||||| || ||| ||||| ||||| ||||| | || || || ||||| || Sbjct 4618 CAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTCGCAGCTCCAA 4559 Query 75991 TCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGC 76050 || ||||| || ||| | |||||| | | |||||| || || ||||| |||| Sbjct 4558 CCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCGTCTGCAACCTGGC 4499 Query 76051 ATCAATCGCCCTTCC 76065 || | ||||| || Sbjct 4498 CTCTCTGGCCCTGCC 4484 >seq7069 Length=10009 Score = 82.4 bits (90), Expect = 9e-11 Identities = 149/217 (69%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 65004 AACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAA 65060 ||| || || || ||| |||||||| | ||||| ||| |||| | || | || Sbjct 1 AACAGTTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAA 60 Query 65061 GTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTC 65120 |||| |||| ||| ||||| |||| || ||| || ||||||||||||||| Sbjct 61 GTCTA---CCTTTGCCACCCGCCTCGTTGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAG 117 Query 65121 CGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTT 65180 || | ||| | | || | ||| | |||||||| || |||||||| ||||| || Sbjct 118 TGGTGCCTTCGCCTCAATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTT 177 Query 65181 CTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||| || || || || || || || |||||||| ||| Sbjct 178 CTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCAC 214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596283380820160