Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq31830 205 1e-47
seq336 165 1e-35
seq31807 129 7e-25
seq7069 82.4 9e-11
>seq31830
Length=311768
Score = 205 bits (226), Expect = 1e-47
Identities = 934/1463 (64%), Gaps = 35/1463 (2%)
Strand=Plus/Minus
Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGCATCCTCA 75203
|||||||| |||| ||||| ||| |||||| |||| ||| || |||| |
Sbjct 111813 TACTTTGGCTTCAAGACCCTGGAGCGTTCCTATCTCCTCAA--GCTTGACGGCAAGATTG 111756
Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263
|| ||| ||| ||||| | ||||| || | |||| ||| || || || |||
Sbjct 111755 CCGAGCGCCCGCAGCACATGATTATGCGTGTTTCCGTCGGTATCTGGGGAGACAACGTTG 111696
Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACC 75321
| |||| | ||||| ||| || |||||| || | | |||| |||||| | ||
Sbjct 111695 AGCGTGTCATTGAGACGTACAACCTCATGTCC--AGCAAATTCTTCACACACGCATCTCC 111638
Query 75322 AACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAA 75381
||||||||||| ||||| || || | ||| |||| |||||||| | | ||
Sbjct 111637 TACCCTCTTCAACGCTGGCACGCCTCAGGCTCAGCTGTCGTCCTGCTTCCTGGTTGACAT 111578
Query 75382 CAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAA 75441
||||| ||| || | |||||||| | || || | | ||||| ||||| ||
Sbjct 111577 GAAGGATGACAGCATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAA 111518
Query 75442 GTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCG 75501
| |||||| |||||||| || || ||||| | | |||| | ||| |||
Sbjct 111517 GATGGCTGGTGGTATTGGTCTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGC 111458
Query 75502 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561
|| || || || ||| | || || | || ||||||||||| || ||| ||| ||
Sbjct 111457 CGGCACCAACGGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGC 111398
Query 75562 GCGCTATGTAAATCA-AGCGG-----GGCGTCGCAAGGGGTCCATCGCGGTCTACTTGGA 75615
|||||| || | || |||| ||||| | || | | || ||||| | ||
Sbjct 111397 GCGCTACGTTGACCAGGGCGGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGA 111341
Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGA 75675
|||||||| || ||| || | ||||||||||| | || ||||| || | || ||
Sbjct 111340 GCCATGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGA 111281
Query 75676 GGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735
|| ||| | | |||||||| || ||||||| || || || ||||||||||| ||
Sbjct 111280 GGTTCGCGCTCGCGATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGT 111221
Query 75736 TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGC 75795
||| || || | ||| |||| | || || || || || || || | |||
Sbjct 111220 CGAGAAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTG 111161
Query 75796 GGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGC--CAA 75852
||||| |||||||| ||| | ||| ||||| || ||| || || || |||
Sbjct 111160 CTACGGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAA 111101
Query 75853 TGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTG 75911
||| | | || ||| || | ||||| | || | ||| | | ||||| ||||| |
Sbjct 111100 ---GACCAT-CAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCG 111045
Query 75912 GAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGG 75971
| | || | ||||| ||||||||| || ||| ||||| ||||| ||||| | |
Sbjct 111044 GCAACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTG 110985
Query 75972 GAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGA 76031
| || || ||||| || || ||||| || ||| | |||||| | | ||||||
Sbjct 110984 GTACCATTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGG 110925
Query 76032 CGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCA 76091
|| || ||||| |||| || | ||||| || || || || | | | ||
Sbjct 110924 TTGCCGTCTGCAACCTGGCCTCTCTGGCCCTGCCCGCCTACGTTGATTACAACAACGGCG 110865
Query 76092 CTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAG 76151
| ||| | | || || || | |||| || | || || || || ||| |
Sbjct 110864 TGTATGACTTCAAGAAGCTCCACCAGGTCACTCAGGTCGTCGTCAGGAACCTCAACAGGA 110805
Query 76152 TCATTGACAGAAATTTTTATCCCG---TTGAGACTGCGCGAAAGTCTAATATGCGACACA 76208
|||| ||| || ||| |||| | ||| || ||| | || || ||||| ||
Sbjct 110804 TCATCGACGTGAACCATTACCCCGTCATCGAGGCT-CGCAACAG--CAACATGCGCCATC 110748
Query 76209 GACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCAT 76268
| || ||||| | ||||| || || | || |||| || || |||| | |
Sbjct 110747 GGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGCTTTCCTTGCTCTCCGCATGCCCT 110688
Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCAT 76328
|||| || ||| ||||||||| | || | |||||||| ||||| || |||||
Sbjct 110687 TTGAGTCTCCTGAGGCCAAGGAGCTCAACAAGCAGATCTTTGAGACCATCTACCACGCTG 110628
Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTT 76388
||||| | || | | ||| | | |||| |||| || | |||||| |
Sbjct 110627 CCCTGACCATGTCATGCAAGCTCGCTCAGGAGGAAGGCCCCTACTCCACCTATGAGGGCT 110568
Query 76389 CTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC- 76447
| |||| ||||| || | ||||| | || |||| |||| || || || | || | |
Sbjct 110567 CGCCCGTCTCCCAGGGTATCCTTCAATACGACATGT-GGAACGTCAAGCCTA-CTGACCT 110510
Query 76448 -TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 76506
| ||||||| | || ||| | |||||| | | || | |||||||||||| |
Sbjct 110509 TTGGGACTGGGCCGACCTGAAGAGCCAGATCAAGCAACACGGCGTCCGTAACAGTCTTCT 110450
Query 76507 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 76566
|||| || ||||| || ||| ||| | || ||| | || || || || ||||| ||
Sbjct 110449 CGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGCTTCGA 110390
Query 76567 ACCATACACAACAAACATCTACC 76589
|| ||||| | ||||||||||
Sbjct 110389 GCCTTACACGTCCAACATCTACC 110367
>seq336
Length=177044
Score = 165 bits (182), Expect = 1e-35
Identities = 560/865 (65%), Gaps = 17/865 (2%)
Strand=Plus/Plus
Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270
||| ||| ||||| | ||||| || | | || ||| || || || |||| |||
Sbjct 110262 CCCGCAGCACATGATTATGCGTGTGTCCGTTGGTATCTGGGGAGACAACGTTGAGCGTGT 110321
Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330
| | ||||| ||| || |||||| | | |||| ||||| | || ||||||||
Sbjct 110322 CATTGAGACGTACAACCTCATGTCCAACAAATTCTTCACACACGCCTCTCCTACCCTCTT 110381
Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390
||| ||||| || || | ||| |||| |||||||| ||| || ||||| ||
Sbjct 110382 CAACGCTGGCACGCCCCAGGCTCAGCTGTCGTCCTGCTTCCTGGTCGACATGAAGGATGA 110441
Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450
|| | |||||||| | || || | | ||||| ||||| ||| ||||||
Sbjct 110442 TAGCATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGG 110501
Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510
|||||||| || || ||||| | | |||| | ||| ||| || || ||
Sbjct 110502 TGGTATTGGTCTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCACCAA 110561
Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570
|| ||| | || || | || ||||||||||| || ||| ||| |||||||| ||
Sbjct 110562 CGGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGT 110621
Query 75571 AAATCA-AGCGG-----GGCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCA 75624
| || |||| ||||| | || | | || ||||| | || ||||||||
Sbjct 110622 TGACCAGGGCGGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGAGCCATGGCA 110678
Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684
|| ||| || | ||||||||||| | || ||||| || | || |||| |||
Sbjct 110679 CGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGC 110738
Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744
| | |||||||| || ||||||| || || || ||||||||||| || ||| ||
Sbjct 110739 TCGCGATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAA 110798
Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGA 75804
|| | ||| |||| | || || || || || || || | ||| |||||
Sbjct 110799 CGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTACGGTGA 110858
Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGC--CAATGCGACTGT 75861
|||||||| ||| | ||| ||||| || ||| || || || ||| ||| |
Sbjct 110859 CGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAA---GACCAT 110915
Query 75862 ACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920
| || ||| || | ||||| | || | ||| | | ||||| ||||| || | || |
Sbjct 110916 -CAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCT 110974
Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980
||||| ||||||||| || ||| ||||| ||||| ||||| | || || ||
Sbjct 110975 TCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTC 111034
Query 75981 AGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTT 76040
||||| || || ||||| || ||| | |||||| | | |||||| || || |
Sbjct 111035 GCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCGTCT 111094
Query 76041 GCAATTTGGCATCAATCGCCCTTCC 76065
|||| |||| || | ||||| ||
Sbjct 111095 GCAACCTGGCCTCTCTGGCCCTGCC 111119
>seq31807
Length=5160
Score = 129 bits (142), Expect = 7e-25
Identities = 438/675 (65%), Gaps = 17/675 (3%)
Strand=Plus/Minus
Query 75401 GGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGG 75460
|||||||| | || || | | ||||| ||||| ||| |||||| ||||||||
Sbjct 5151 GGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGT 5092
Query 75461 ATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCA 75520
|| || ||||| | | |||| | ||| ||| || || || || |||
Sbjct 5091 CTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCACCAACGGCACTTCA 5032
Query 75521 GATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCA-AGC 75579
| || || | || ||||||||||| || ||| ||| |||||||| || | || ||
Sbjct 5031 AACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGC 4972
Query 75580 GG-----GGCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATC 75634
|| ||||| | || | | || ||||| | || |||||||| || ||| ||
Sbjct 4971 GGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTC 4915
Query 75635 ATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTC 75694
| ||||||||||| | || ||||| || | || |||| ||| | | ||||||
Sbjct 4914 TTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCTCGCGATCTC 4855
Query 75695 TTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGG 75754
|| || ||||||| || || || ||||||||||| || ||| || || | |||
Sbjct 4854 TTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACTGG 4795
Query 75755 TCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAA 75814
|||| | || || || || || || || | ||| ||||| ||||||||
Sbjct 4794 ACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTACGGTGACGAGTTTGAG 4735
Query 75815 GCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGC--CAATGCGACTGTACCAGCCGCC 75871
||| | ||| ||||| || ||| || || || ||| ||| | | || |||
Sbjct 4734 GCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAA---GACCAT-CAAGGCGCA 4679
Query 75872 GATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTA 75930
|| | ||||| | || | ||| | | ||||| ||||| || | || | ||||| ||
Sbjct 4678 GAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTCTA 4619
Query 75931 CAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAA 75990
||||||| || ||| ||||| ||||| ||||| | || || || ||||| ||
Sbjct 4618 CAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTCGCAGCTCCAA 4559
Query 75991 TCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGC 76050
|| ||||| || ||| | |||||| | | |||||| || || ||||| ||||
Sbjct 4558 CCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCGTCTGCAACCTGGC 4499
Query 76051 ATCAATCGCCCTTCC 76065
|| | ||||| ||
Sbjct 4498 CTCTCTGGCCCTGCC 4484
>seq7069
Length=10009
Score = 82.4 bits (90), Expect = 9e-11
Identities = 149/217 (69%), Gaps = 6/217 (3%)
Strand=Plus/Plus
Query 65004 AACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAA 65060
||| || || || ||| |||||||| | ||||| ||| |||| | || | ||
Sbjct 1 AACAGTTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAA 60
Query 65061 GTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTC 65120
|||| |||| ||| ||||| |||| || ||| || |||||||||||||||
Sbjct 61 GTCTA---CCTTTGCCACCCGCCTCGTTGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAG 117
Query 65121 CGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTT 65180
|| | ||| | | || | ||| | |||||||| || |||||||| ||||| ||
Sbjct 118 TGGTGCCTTCGCCTCAATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTT 177
Query 65181 CTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217
||| || || || || || || || |||||||| |||
Sbjct 178 CTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCAC 214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596283380820160
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