Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq20113 208 1e-48 seq35245 168 9e-37 seq8335 161 1e-34 seq11113 129 8e-25 seq35329 118 1e-21 seq114 100 4e-16 seq31446 98.7 1e-15 seq34216 95.1 2e-14 >seq20113 Length=64481 Score = 208 bits (230), Expect = 1e-48 Identities = 186/233 (80%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| |||||||| || || || || || || || ||||| ||||||||||||| Sbjct 10951 GTGGTATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGT 11010 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| ||| |||| |||||||||| || ||||| || ||||| |||| Sbjct 11011 CTTCCGACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCCG 11070 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | || || || || || |||||||| || |||||||| ||||| ||||| || | || | Sbjct 11071 ACCAACAGCGCCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCCGACT 11130 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| |||| |||||||| ||||| ||||| ||||| | ||||| |||||| Sbjct 11131 ACAACATTCAGAAGGAGTCGACTCTTCACCTCGTTCTCCGCCTTCGTGGTGGT 11183 Score = 158 bits (174), Expect = 2e-33 Identities = 174/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||||||||| || || || || || || || |||||||| | || || || | Sbjct 11179 GTGGTATGCAAATCTTCGTCAAGACACTCACCGGTAAGACTATCACATTGGAAGTCGAAT 11238 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| ||| |||| ||||||| ||||| ||||| || || || |||| Sbjct 11239 CATCCGACACGATCGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCTCCCG 11298 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | || || || || ||||| ||||| || ||||| || ||||| || ||||| |||| | Sbjct 11299 ACCAACAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTGTCTGACT 11358 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||| | || |||||||| || || || | || || | || || ||||| Sbjct 11359 ACAACATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 11410 >seq35245 Length=420 Score = 168 bits (186), Expect = 9e-37 Identities = 175/229 (76%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || ||||||||||| ||||| |||||||| Sbjct 335 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 276 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||| || || ||||| ||||| || ||||| || Sbjct 275 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAA 216 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || | | ||||| || |||||||| ||||| || || || | || |||||| Sbjct 215 CAGCGCCTGA---TNGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAAC 159 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090 | || |||||||| ||||| ||||| || || | || || ||||||| Sbjct 158 ATCCAGAAGGAGTCCACTCTGCACCTCGTGCTCCGCCTGCGTGGTGGTG 110 >seq8335 Length=118861 Score = 161 bits (178), Expect = 1e-34 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||||||||| || || || || || || || |||||||| | || || || | Sbjct 14730 GTGGTATGCAAATCTTCGTCAAGACGCTCACCGGTAAGACTATCACATTGGAAGTCGAAT 14789 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| || | || ||||||| ||||| ||||| |||||||| |||| Sbjct 14790 CATCCGACACGATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGCATTCCTCCCG 14849 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 |||| || || || ||||| ||||| || |||||||| || || || ||||| |||| | Sbjct 14850 ATCAACAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCTGACT 14909 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||| | || |||||||| || || || | || || | || || ||||| Sbjct 14910 ACAACATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 14961 >seq11113 Length=407183 Score = 129 bits (142), Expect = 8e-25 Identities = 174/241 (72%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 ||||| | ||||| ||||| ||||||| || || || || ||||| || |||||||| Sbjct 104772 GCAGTCATCACTGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGACGCC 104831 Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATT 195829 | | || || ||||| ||| || | || ||||| || || || || ||||| || Sbjct 104832 GGTCTCATCGCCGGTCTCAACGTCCTCCGTATCATCAACGAGCCCACTGCTGCTGCCATC 104891 Query 195830 GCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA---AATGTATTGATCTTTGATCTC 195886 ||||| ||||| |||||||| || ||| | | | || || | ||||| |||||| Sbjct 104892 GCTTACGGTCTCGACAAGAA---GGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTC 104948 Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946 ||||||||||| || ||||| || || || | ||||| | ||||| ||||| || ||| Sbjct 104949 GGTGGTGGTACCTTCGATGTGTCTCTCCTGACCATTGAGGACGGTATCTTCGAGGTCAAG 105008 Query 195947 G 195947 | Sbjct 105009 G 105009 Score = 125 bits (138), Expect = 9e-24 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 195711 CAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTG 195770 |||| | ||||| ||||| ||||||| || || || || ||||| || |||||||||| Sbjct 93810 CAGTCATCACTGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGACGCTG 93869 Query 195771 CTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTG 195830 | || || ||||| ||| || | || ||||| || || || || ||||| || | Sbjct 93870 GTCTCATCGCCGGTCTCAACGTCCTCCGTATCATCAACGAGCCCACCGCCGCTGCCATCG 93929 Query 195831 CTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890 |||| ||||| |||||||| || | || || || | || || |||||||||| Sbjct 93930 CTTACGGTCTCGACAAGAAGGTTGATGGTGAGCGCAACGTCCTCATTTTCGATCTCGGTG 93989 Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGG 195947 ||||||| || ||||| || || || | || || | |||||| ||||| || |||| Sbjct 93990 GTGGTACCTTCGATGTGTCTCTCCTGACCATCGAGGATGGTATCTTCGAGGTCAAGG 94046 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 || |||||| | || ||||| || ||||| || || || || || || || | || Sbjct 93402 GATATTATCGCCAACGACCAGGGTAACCGCACCACCCCCTCCATTGTCGCTTTCAACGAC 93461 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 | || |||||| | ||||||||||| || || |||| || ||||||||| | | || Sbjct 93462 ACCGAGCGTCTCATCGGAGATGCCGCCAAGAACCAGATGGCCATGAACCCTCACCACACC 93521 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTT 195516 ||||| ||||| ||||| || ||||| |||||||| Sbjct 93522 GTCTTCGACGCCAAGCGCCTAATTGGCCGCAAGTT 93556 >seq35329 Length=15536 Score = 118 bits (130), Expect = 1e-21 Identities = 195/281 (69%), Gaps = 3/281 (1%) Strand=Plus/Minus Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 || ||| | || || || |||||||||| || || || ||||| || |||||||| Sbjct 5160 GCCGTTATCACCGTCCCCGCTTACTTCAACGACAACCAGCGTCAGGCCACCAAGGACGCC 5101 Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATT 195829 | ||| || || ||||| ||| ||| | || ||||| || || || || || || ||| Sbjct 5100 GGTGCCATCGCTGGTCTCAACGTTCTCCGCATCATCAACGAGCCCACCGCTGCCGCCATT 5041 Query 195830 GCTTATGGTCTGGACAAGAACAAGG---ACGAAGATAAAAATGTATTGATCTTTGATCTC 195886 || || ||||| | | |||| || | || || || | |||| |||||| Sbjct 5040 GCCTACGGTCTCGGCGCTGGCAAGTCCAACAAGGAGCGCAACGTTCTCATCTACGATCTC 4981 Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946 ||||||||||| || |||||||| || || || || | |||||| | ||| || ||| Sbjct 4980 GGTGGTGGTACTTTCGATGTCTCCCTCCTGAACATCCAGGGTGGTGTCTTCACCGTCAAG 4921 Query 195947 GCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||| | ||| | || ||||| ||||| | || ||||| Sbjct 4920 GCCACTTCCGGTAACACCCATCTTGGTGGCCAGGACTTCGA 4880 >seq114 Length=180687 Score = 100 bits (110), Expect = 4e-16 Identities = 220/326 (67%), Gaps = 3/326 (1%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||| || || || | | | | || || | || | | || || || || Sbjct 167053 AAGATGAAGGACACCGCTGAGGCCTACCTCGGCAAGAAGGTCACTCACGCCGTCGTCACC 166994 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| || || || ||||| || ||||| |||| || ||||| Sbjct 166993 GTCCCCGCCTACTTCAACGACAACCAGCGCCAGGCCACCAAGGATGCTGGTGTCATTGCC 166934 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || ||| || | || |||| || || || || || || || || || || || Sbjct 166933 GGCCTTAACGTCCTCCGTATCGTCAACGAGCCCACCGCCGCCGCCATCGCCTACGGCCTT 166874 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 |||||| | | | ||| | | || |||| ||| ||||||||||||||||| || Sbjct 166873 GACAAGCTCGACGGCGA-GCGCCAGATC-ATTG-TCTACGATCTCGGTGGTGGTACCTTC 166817 Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961 |||||||| || || ||||| || | ||||| || || || || ||||| Sbjct 166816 GATGTCTCTCTCCTGTCCATTGATCAGGGCGTCTTCGAGGTGCTTGCCACCGCCGGTGAC 166757 Query 195962 ACTCATCTAGGTGGTGAAGATTTCGA 195987 || || || |||||||| |||||||| Sbjct 166756 ACCCACCTTGGTGGTGAGGATTTCGA 166731 >seq31446 Length=38536 Score = 98.7 bits (108), Expect = 1e-15 Identities = 217/326 (67%), Gaps = 6/326 (2%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||||||||| || | | | | || |||| || | || || || ||| Sbjct 9968 AAGATGAAGGAGACTGCCGAGGCCTACCTCTCCAAGCCTGTCAAGAACGCCGTCGTCACT 10027 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || ||||| ||||||| || || || || ||||| || ||||| |||| | ||||| Sbjct 10028 GTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGATGCTGGTCAGATTGCC 10087 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || ||| ||| | | |||| || || || || || || |||| || || || Sbjct 10088 GGCCTGAACGTTCTGCGTGTCGTCAACGAGCCCACCGCCGCCGCCCTTGCCTACGGCATG 10147 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 || ||| || ||| | | || ||| ||||| || ||||||||||| Sbjct 10148 GAGAAGGACGCCGACCGCGTT------GTCGCCGTCTACGATCTTGGCGGTGGTACGTTC 10201 Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961 ||| |||| ||||| | || | ||| | ||||| || ||| |||| ||||| Sbjct 10202 GATATCTCCGTTCTCGAGATCCAGAACGGTGTCTTCGAGGTCAAGTCTACCAACGGTGAC 10261 Query 195962 ACTCATCTAGGTGGTGAAGATTTCGA 195987 || || || |||||||| || || || Sbjct 10262 ACCCACCTGGGTGGTGAGGACTTTGA 10287 >seq34216 Length=529 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 || |||||| | || ||||| || ||||| || || || || || || || | || Sbjct 201 GATATTATCGCCAACGACCAGGGTAACCGCACCACCCCCTCCATTGTCGCTTTCAACGAC 260 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 | || |||||| | ||||||||||| || || |||| || ||||||||| | | || Sbjct 261 ACCGAGCGTCTCATCGGAGATGCCGCCAAGAACCAGATGGCCATGAACCCTCACCACACC 320 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTT 195516 ||||| ||||| ||||| || ||||| |||||||| Sbjct 321 GTCTTCGACGCCAAGCGCCTAATTGGCCGCAAGTT 355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657546774067040