Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq20113 208 1e-48
seq35245 168 9e-37
seq8335 161 1e-34
seq11113 129 8e-25
seq35329 118 1e-21
seq114 100 4e-16
seq31446 98.7 1e-15
seq34216 95.1 2e-14
>seq20113
Length=64481
Score = 208 bits (230), Expect = 1e-48
Identities = 186/233 (80%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| ||||||| |||||||| || || || || || || || ||||| |||||||||||||
Sbjct 10951 GTGGTATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGT 11010
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
| || ||||| ||||| ||| |||| |||||||||| || ||||| || ||||| ||||
Sbjct 11011 CTTCCGACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCCG 11070
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
| || || || || || |||||||| || |||||||| ||||| ||||| || | || |
Sbjct 11071 ACCAACAGCGCCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCCGACT 11130
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
||||| |||| |||||||| ||||| ||||| ||||| | ||||| ||||||
Sbjct 11131 ACAACATTCAGAAGGAGTCGACTCTTCACCTCGTTCTCCGCCTTCGTGGTGGT 11183
Score = 158 bits (174), Expect = 2e-33
Identities = 174/232 (75%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| ||||||||||||| || || || || || || || |||||||| | || || || |
Sbjct 11179 GTGGTATGCAAATCTTCGTCAAGACACTCACCGGTAAGACTATCACATTGGAAGTCGAAT 11238
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
| || ||||| ||||| ||| |||| ||||||| ||||| ||||| || || || ||||
Sbjct 11239 CATCCGACACGATCGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCTCCCG 11298
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
| || || || || ||||| ||||| || ||||| || ||||| || ||||| |||| |
Sbjct 11299 ACCAACAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTGTCTGACT 11358
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088
||||| | || |||||||| || || || | || || | || || |||||
Sbjct 11359 ACAACATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 11410
>seq35245
Length=420
Score = 168 bits (186), Expect = 9e-37
Identities = 175/229 (76%), Gaps = 3/229 (1%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| || || || ||||||||||| ||||| ||||||||
Sbjct 335 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 276
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || |||| ||||||| || || ||||| ||||| || ||||| ||
Sbjct 275 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAA 216
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || | | ||||| || |||||||| ||||| || || || | || ||||||
Sbjct 215 CAGCGCCTGA---TNGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAAC 159
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090
| || |||||||| ||||| ||||| || || | || || |||||||
Sbjct 158 ATCCAGAAGGAGTCCACTCTGCACCTCGTGCTCCGCCTGCGTGGTGGTG 110
>seq8335
Length=118861
Score = 161 bits (178), Expect = 1e-34
Identities = 175/232 (75%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| ||||||||||||| || || || || || || || |||||||| | || || || |
Sbjct 14730 GTGGTATGCAAATCTTCGTCAAGACGCTCACCGGTAAGACTATCACATTGGAAGTCGAAT 14789
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
| || ||||| ||||| || | || ||||||| ||||| ||||| |||||||| ||||
Sbjct 14790 CATCCGACACGATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGCATTCCTCCCG 14849
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
|||| || || || ||||| ||||| || |||||||| || || || ||||| |||| |
Sbjct 14850 ATCAACAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCTGACT 14909
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088
||||| | || |||||||| || || || | || || | || || |||||
Sbjct 14910 ACAACATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 14961
>seq11113
Length=407183
Score = 129 bits (142), Expect = 8e-25
Identities = 174/241 (72%), Gaps = 6/241 (2%)
Strand=Plus/Plus
Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769
||||| | ||||| ||||| ||||||| || || || || ||||| || ||||||||
Sbjct 104772 GCAGTCATCACTGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGACGCC 104831
Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATT 195829
| | || || ||||| ||| || | || ||||| || || || || ||||| ||
Sbjct 104832 GGTCTCATCGCCGGTCTCAACGTCCTCCGTATCATCAACGAGCCCACTGCTGCTGCCATC 104891
Query 195830 GCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA---AATGTATTGATCTTTGATCTC 195886
||||| ||||| |||||||| || ||| | | | || || | ||||| ||||||
Sbjct 104892 GCTTACGGTCTCGACAAGAA---GGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTC 104948
Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946
||||||||||| || ||||| || || || | ||||| | ||||| ||||| || |||
Sbjct 104949 GGTGGTGGTACCTTCGATGTGTCTCTCCTGACCATTGAGGACGGTATCTTCGAGGTCAAG 105008
Query 195947 G 195947
|
Sbjct 105009 G 105009
Score = 125 bits (138), Expect = 9e-24
Identities = 170/237 (72%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 195711 CAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTG 195770
|||| | ||||| ||||| ||||||| || || || || ||||| || ||||||||||
Sbjct 93810 CAGTCATCACTGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGACGCTG 93869
Query 195771 CTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTG 195830
| || || ||||| ||| || | || ||||| || || || || ||||| || |
Sbjct 93870 GTCTCATCGCCGGTCTCAACGTCCTCCGTATCATCAACGAGCCCACCGCCGCTGCCATCG 93929
Query 195831 CTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890
|||| ||||| |||||||| || | || || || | || || ||||||||||
Sbjct 93930 CTTACGGTCTCGACAAGAAGGTTGATGGTGAGCGCAACGTCCTCATTTTCGATCTCGGTG 93989
Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGG 195947
||||||| || ||||| || || || | || || | |||||| ||||| || ||||
Sbjct 93990 GTGGTACCTTCGATGTGTCTCTCCTGACCATCGAGGATGGTATCTTCGAGGTCAAGG 94046
Score = 95.1 bits (104), Expect = 2e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421
|| |||||| | || ||||| || ||||| || || || || || || || | ||
Sbjct 93402 GATATTATCGCCAACGACCAGGGTAACCGCACCACCCCCTCCATTGTCGCTTTCAACGAC 93461
Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481
| || |||||| | ||||||||||| || || |||| || ||||||||| | | ||
Sbjct 93462 ACCGAGCGTCTCATCGGAGATGCCGCCAAGAACCAGATGGCCATGAACCCTCACCACACC 93521
Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTT 195516
||||| ||||| ||||| || ||||| ||||||||
Sbjct 93522 GTCTTCGACGCCAAGCGCCTAATTGGCCGCAAGTT 93556
>seq35329
Length=15536
Score = 118 bits (130), Expect = 1e-21
Identities = 195/281 (69%), Gaps = 3/281 (1%)
Strand=Plus/Minus
Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769
|| ||| | || || || |||||||||| || || || ||||| || ||||||||
Sbjct 5160 GCCGTTATCACCGTCCCCGCTTACTTCAACGACAACCAGCGTCAGGCCACCAAGGACGCC 5101
Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATT 195829
| ||| || || ||||| ||| ||| | || ||||| || || || || || || |||
Sbjct 5100 GGTGCCATCGCTGGTCTCAACGTTCTCCGCATCATCAACGAGCCCACCGCTGCCGCCATT 5041
Query 195830 GCTTATGGTCTGGACAAGAACAAGG---ACGAAGATAAAAATGTATTGATCTTTGATCTC 195886
|| || ||||| | | |||| || | || || || | |||| ||||||
Sbjct 5040 GCCTACGGTCTCGGCGCTGGCAAGTCCAACAAGGAGCGCAACGTTCTCATCTACGATCTC 4981
Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946
||||||||||| || |||||||| || || || || | |||||| | ||| || |||
Sbjct 4980 GGTGGTGGTACTTTCGATGTCTCCCTCCTGAACATCCAGGGTGGTGTCTTCACCGTCAAG 4921
Query 195947 GCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987
|| ||| | ||| | || ||||| ||||| | || |||||
Sbjct 4920 GCCACTTCCGGTAACACCCATCTTGGTGGCCAGGACTTCGA 4880
>seq114
Length=180687
Score = 100 bits (110), Expect = 4e-16
Identities = 220/326 (67%), Gaps = 3/326 (1%)
Strand=Plus/Minus
Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721
||||||||||| || || || | | | | || || | || | | || || || ||
Sbjct 167053 AAGATGAAGGACACCGCTGAGGCCTACCTCGGCAAGAAGGTCACTCACGCCGTCGTCACC 166994
Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781
|| || || ||||||| || || || ||||| || ||||| |||| || |||||
Sbjct 166993 GTCCCCGCCTACTTCAACGACAACCAGCGCCAGGCCACCAAGGATGCTGGTGTCATTGCC 166934
Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841
|| || ||| || | || |||| || || || || || || || || || || ||
Sbjct 166933 GGCCTTAACGTCCTCCGTATCGTCAACGAGCCCACCGCCGCCGCCATCGCCTACGGCCTT 166874
Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901
|||||| | | | ||| | | || |||| ||| ||||||||||||||||| ||
Sbjct 166873 GACAAGCTCGACGGCGA-GCGCCAGATC-ATTG-TCTACGATCTCGGTGGTGGTACCTTC 166817
Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961
|||||||| || || ||||| || | ||||| || || || || |||||
Sbjct 166816 GATGTCTCTCTCCTGTCCATTGATCAGGGCGTCTTCGAGGTGCTTGCCACCGCCGGTGAC 166757
Query 195962 ACTCATCTAGGTGGTGAAGATTTCGA 195987
|| || || |||||||| ||||||||
Sbjct 166756 ACCCACCTTGGTGGTGAGGATTTCGA 166731
>seq31446
Length=38536
Score = 98.7 bits (108), Expect = 1e-15
Identities = 217/326 (67%), Gaps = 6/326 (2%)
Strand=Plus/Plus
Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721
||||||||||||||||| || | | | | || |||| || | || || || |||
Sbjct 9968 AAGATGAAGGAGACTGCCGAGGCCTACCTCTCCAAGCCTGTCAAGAACGCCGTCGTCACT 10027
Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781
|| ||||| ||||||| || || || || ||||| || ||||| |||| | |||||
Sbjct 10028 GTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGATGCTGGTCAGATTGCC 10087
Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841
|| || ||| ||| | | |||| || || || || || || |||| || || ||
Sbjct 10088 GGCCTGAACGTTCTGCGTGTCGTCAACGAGCCCACCGCCGCCGCCCTTGCCTACGGCATG 10147
Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901
|| ||| || ||| | | || ||| ||||| || |||||||||||
Sbjct 10148 GAGAAGGACGCCGACCGCGTT------GTCGCCGTCTACGATCTTGGCGGTGGTACGTTC 10201
Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961
||| |||| ||||| | || | ||| | ||||| || ||| |||| |||||
Sbjct 10202 GATATCTCCGTTCTCGAGATCCAGAACGGTGTCTTCGAGGTCAAGTCTACCAACGGTGAC 10261
Query 195962 ACTCATCTAGGTGGTGAAGATTTCGA 195987
|| || || |||||||| || || ||
Sbjct 10262 ACCCACCTGGGTGGTGAGGACTTTGA 10287
>seq34216
Length=529
Score = 95.1 bits (104), Expect = 2e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421
|| |||||| | || ||||| || ||||| || || || || || || || | ||
Sbjct 201 GATATTATCGCCAACGACCAGGGTAACCGCACCACCCCCTCCATTGTCGCTTTCAACGAC 260
Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481
| || |||||| | ||||||||||| || || |||| || ||||||||| | | ||
Sbjct 261 ACCGAGCGTCTCATCGGAGATGCCGCCAAGAACCAGATGGCCATGAACCCTCACCACACC 320
Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTT 195516
||||| ||||| ||||| || ||||| ||||||||
Sbjct 321 GTCTTCGACGCCAAGCGCCTAATTGGCCGCAAGTT 355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657546774067040
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