Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq20113 93.3 8e-14
seq8335 93.3 8e-14
>seq20113
Length=64481
Score = 93.3 bits (102), Expect = 8e-14
Identities = 162/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||| | | || || || || || | || | ||| || ||| ||
Sbjct 11191 ATTTGCATACCACCACGAAGGCGGAGAACGAGGTGAAGAGTCGACTCCTTCTGAATGTTG 11132
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|||||||| | || | | ||| || | || ||||| ||||| || | | ||||||
Sbjct 11131 TAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGG 11072
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| ||||| || || || || || || || |||| || | || || || ||||||
Sbjct 11071 TCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAA 11012
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||||| || ||||| || || || || || || || || ||||| || |||||
Sbjct 11011 GACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 10956
>seq8335
Length=118861
Score = 93.3 bits (102), Expect = 8e-14
Identities = 162/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||| | | || || || || || | || | ||| || ||| ||
Sbjct 14742 ATTTGCATACCACCACGGAGGCGGAGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTG 14683
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|||||||| || || | | ||| || | || ||||| || || || | | ||||||
Sbjct 14682 TAGTCGGACAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGG 14623
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| ||||| || || || || || || || || | || | || ||| || ||||||
Sbjct 14622 TCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAA 14563
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| || || ||||| || || || || || ||||| || ||||| || |||||
Sbjct 14562 GACTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 14507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899222768310240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |