Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq23891 131 5e-25 seq7069 118 3e-21 seq336 93.3 1e-13 seq31830 91.5 4e-13 >seq23891 Length=52563 Score = 131 bits (144), Expect = 5e-25 Identities = 180/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651 ||||||||| || ||||| || | || || ||||| |||||||| ||||| |||| Sbjct 54 ACGACGCTGGATGTAACCCGTCTCGGCAGTCTTGACAGCAGTATCAATAAGACCCTCACG 113 Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTC 302711 |||| |||| || |||||||| | || || || || | | | | ||| |||| Sbjct 114 ACCAGCCATGGCGTGGAAGAAGAATTCGCTAGGAGTGAGGCCACGGAGATACGAGTTCTC 173 Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 ||||||||| || || || || || | || |||||| ||||| ||||| || | || Sbjct 174 AACGAAACCGCGGGCTTCAGGAGAGTAATCATCCTTGGTGAAGTGAGGCAGAGTGCGGTA 233 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831 || ||||| | || ||||||||||| || ||| | ||||| || | ||| | |||| Sbjct 234 CTTGAAGCCGAAAGGAATACGCTTTCCCTCGACGATTTGCTGACCGACCAACGCAGTCAT 293 Query 302832 CTGCGAAATATT 302843 ||||||||| || Sbjct 294 CTGCGAAATGTT 305 >seq7069 Length=10009 Score = 118 bits (130), Expect = 3e-21 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||| || ||| ||||| |||||||||| | | ||||||| || ||| | | Sbjct 6 TTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAAGTCTA 65 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 ||||| || || ||||||||||| || || || ||||| || || ||||||||||| | Sbjct 66 CCTTTGCCACCCGCCTCGTTGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGTGGTGCCT 125 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || ||| || || ||||| || ||||| || | | ||||| ||| ||| || |||| Sbjct 126 TCGCCTCAATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACG 185 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 | || || || | ||||||| |||||||| || || || Sbjct 186 AGCTCATCTCTCGTGACGAGGGTCTTCACACTGATTTCGC 225 >seq336 Length=177044 Score = 93.3 bits (102), Expect = 1e-13 Identities = 445/703 (63%), Gaps = 11/703 (2%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || |||||||| ||||||||| || || ||||| || | ||||||||||| Sbjct 111069 GTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTT 111010 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||| || ||| | ||| | || ||||| |||| || Sbjct 111009 GCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGC 110950 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || || | ||| || | | || || || |||| | |||| || Sbjct 110949 CTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGATGGTCTTGCGGCCCTTGCCAGCCTT 110890 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 ||| || ||| |||| | | || |||||||| || ||| || |||||||| Sbjct 110889 CTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCA 110830 Query 155870 CTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATAC 155926 || | |||||| | || | ||| || || ||| |||||| ||| || | Sbjct 110829 CTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGA---CACGCTTCATGAAGAG 110773 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 ||| ||| | || ||| || || | || |||||| | |||||| || Sbjct 110772 ATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCGTGGTT 110713 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| || || || | ||| || | ||||| || |||||| || || || ||||| Sbjct 110712 CTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAA 110653 Query 156047 ACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 | || | | | ||||| ||||| || || || || || || || |||||||| | Sbjct 110652 AGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCG 110593 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 ||||| || | || || || |||||||| ||||| ||| ||| | || |||| | Sbjct 110592 AAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTGGC 110533 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATT 156222 || | ||| | | || ||||||||||| | |||| || || || || || Sbjct 110532 ACGGATGCGATGGACGTTCAGACCAATACCACCAG-CCATCTTGGAGATCATGGCACAGG 110474 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282 ||| | || | | | ||||||||||| |||||| | ||| | || |||| | Sbjct 110473 TCTTGAGGGTGTCGTAGATACCTTCAATGCTATCATCCTTCATGTCGACCAGGAAGCAGG 110414 Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325 | | |||| | || || ||||||||||| || ||||| Sbjct 110413 ACGACAGCTGAGCCTGGGGCGTGCCAGCGTTGAAGAGGGTAGG 110371 >seq31830 Length=311768 Score = 91.5 bits (100), Expect = 4e-13 Identities = 450/712 (63%), Gaps = 11/712 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || |||||||| ||||||||| || || ||||| || | ||||||||||| Sbjct 110941 GTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTT 111000 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||| || ||| | ||| | || ||||| |||| || Sbjct 111001 GCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGC 111060 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || || | ||| || | | || || || |||| | |||| || Sbjct 111061 CTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGATGGTCTTGCGGCCCTTGCCAGCCTT 111120 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 ||| || ||| |||| | | || |||||||| || ||| || |||||||| Sbjct 111121 CTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCA 111180 Query 155870 CTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATAC 155926 || | |||||| | || | ||| || || ||| |||||| ||| || | Sbjct 111181 CTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGA---CACGCTTCATGAAGAG 111237 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 ||| ||| | || ||| || || | || |||||| | |||||| || Sbjct 111238 ATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCGTGGTT 111297 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| || || || | ||| || | ||||| || |||||| || || || ||||| Sbjct 111298 CTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAA 111357 Query 156047 ACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 | || | | | ||||| ||||| || || || || || || || |||||||| | Sbjct 111358 AGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCG 111417 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 ||||| || | || || || |||||||| ||||| ||| ||| | || |||| | Sbjct 111418 AAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTGGC 111477 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATT 156222 || | ||| | | || ||||||||||| | |||| || || || || || Sbjct 111478 ACGGATGCGATGGACGTTCAGACCAATACCACCAG-CCATCTTGGAGATCATGGCACAGG 111536 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282 ||| | || | | | ||||||||||| ||||| | ||| | || |||| | Sbjct 111537 TCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCAGG 111596 Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATG 156334 | | |||| | || || ||||||||||| || ||||| | ||| || Sbjct 111597 ACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTG 111648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471093805178734