Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq23891 131 5e-25
seq7069 118 3e-21
seq336 93.3 1e-13
seq31830 91.5 4e-13
>seq23891
Length=52563
Score = 131 bits (144), Expect = 5e-25
Identities = 180/252 (71%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651
||||||||| || ||||| || | || || ||||| |||||||| ||||| ||||
Sbjct 54 ACGACGCTGGATGTAACCCGTCTCGGCAGTCTTGACAGCAGTATCAATAAGACCCTCACG 113
Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTC 302711
|||| |||| || |||||||| | || || || || | | | | ||| ||||
Sbjct 114 ACCAGCCATGGCGTGGAAGAAGAATTCGCTAGGAGTGAGGCCACGGAGATACGAGTTCTC 173
Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771
||||||||| || || || || || | || |||||| ||||| ||||| || | ||
Sbjct 174 AACGAAACCGCGGGCTTCAGGAGAGTAATCATCCTTGGTGAAGTGAGGCAGAGTGCGGTA 233
Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831
|| ||||| | || ||||||||||| || ||| | ||||| || | ||| | ||||
Sbjct 234 CTTGAAGCCGAAAGGAATACGCTTTCCCTCGACGATTTGCTGACCGACCAACGCAGTCAT 293
Query 302832 CTGCGAAATATT 302843
||||||||| ||
Sbjct 294 CTGCGAAATGTT 305
>seq7069
Length=10009
Score = 118 bits (130), Expect = 3e-21
Identities = 158/220 (72%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
|||| || ||| ||||| |||||||||| | | ||||||| || ||| | |
Sbjct 6 TTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAAGTCTA 65
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
||||| || || ||||||||||| || || || ||||| || || ||||||||||| |
Sbjct 66 CCTTTGCCACCCGCCTCGTTGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGTGGTGCCT 125
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| ||| || || ||||| || ||||| || | | ||||| ||| ||| || ||||
Sbjct 126 TCGCCTCAATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACG 185
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
| || || || | ||||||| |||||||| || || ||
Sbjct 186 AGCTCATCTCTCGTGACGAGGGTCTTCACACTGATTTCGC 225
>seq336
Length=177044
Score = 93.3 bits (102), Expect = 1e-13
Identities = 445/703 (63%), Gaps = 11/703 (2%)
Strand=Plus/Minus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || |||||||| ||||||||| || || ||||| || | |||||||||||
Sbjct 111069 GTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTT 111010
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| | ||| || ||||||||| || ||| | ||| | || ||||| |||| ||
Sbjct 111009 GCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGC 110950
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|| || | ||| || | | || || || |||| | |||| ||
Sbjct 110949 CTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGATGGTCTTGCGGCCCTTGCCAGCCTT 110890
Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869
||| || ||| |||| | | || |||||||| || ||| || ||||||||
Sbjct 110889 CTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCA 110830
Query 155870 CTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATAC 155926
|| | |||||| | || | ||| || || ||| |||||| ||| || |
Sbjct 110829 CTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGA---CACGCTTCATGAAGAG 110773
Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986
||| ||| | || ||| || || | || |||||| | |||||| ||
Sbjct 110772 ATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCGTGGTT 110713
Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046
||| || || || | ||| || | ||||| || |||||| || || || |||||
Sbjct 110712 CTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAA 110653
Query 156047 ACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103
| || | | | ||||| ||||| || || || || || || || |||||||| |
Sbjct 110652 AGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCG 110593
Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163
||||| || | || || || |||||||| ||||| ||| ||| | || |||| |
Sbjct 110592 AAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTGGC 110533
Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATT 156222
|| | ||| | | || ||||||||||| | |||| || || || || ||
Sbjct 110532 ACGGATGCGATGGACGTTCAGACCAATACCACCAG-CCATCTTGGAGATCATGGCACAGG 110474
Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282
||| | || | | | ||||||||||| |||||| | ||| | || |||| |
Sbjct 110473 TCTTGAGGGTGTCGTAGATACCTTCAATGCTATCATCCTTCATGTCGACCAGGAAGCAGG 110414
Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325
| | |||| | || || ||||||||||| || |||||
Sbjct 110413 ACGACAGCTGAGCCTGGGGCGTGCCAGCGTTGAAGAGGGTAGG 110371
>seq31830
Length=311768
Score = 91.5 bits (100), Expect = 4e-13
Identities = 450/712 (63%), Gaps = 11/712 (2%)
Strand=Plus/Plus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || |||||||| ||||||||| || || ||||| || | |||||||||||
Sbjct 110941 GTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTT 111000
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| | ||| || ||||||||| || ||| | ||| | || ||||| |||| ||
Sbjct 111001 GCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGC 111060
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|| || | ||| || | | || || || |||| | |||| ||
Sbjct 111061 CTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGATGGTCTTGCGGCCCTTGCCAGCCTT 111120
Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869
||| || ||| |||| | | || |||||||| || ||| || ||||||||
Sbjct 111121 CTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCA 111180
Query 155870 CTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATAC 155926
|| | |||||| | || | ||| || || ||| |||||| ||| || |
Sbjct 111181 CTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGA---CACGCTTCATGAAGAG 111237
Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986
||| ||| | || ||| || || | || |||||| | |||||| ||
Sbjct 111238 ATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCGTGGTT 111297
Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046
||| || || || | ||| || | ||||| || |||||| || || || |||||
Sbjct 111298 CTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAA 111357
Query 156047 ACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103
| || | | | ||||| ||||| || || || || || || || |||||||| |
Sbjct 111358 AGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCG 111417
Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163
||||| || | || || || |||||||| ||||| ||| ||| | || |||| |
Sbjct 111418 AAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTGGC 111477
Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATT 156222
|| | ||| | | || ||||||||||| | |||| || || || || ||
Sbjct 111478 ACGGATGCGATGGACGTTCAGACCAATACCACCAG-CCATCTTGGAGATCATGGCACAGG 111536
Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282
||| | || | | | ||||||||||| ||||| | ||| | || |||| |
Sbjct 111537 TCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCAGG 111596
Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATG 156334
| | |||| | || || ||||||||||| || ||||| | ||| ||
Sbjct 111597 ACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTG 111648
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471093805178734
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |