Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq31830 154 1e-32 seq8335 125 6e-24 seq20113 122 8e-23 >seq31830 Length=311768 Score = 154 bits (170), Expect = 1e-32 Identities = 1057/1678 (63%), Gaps = 64/1678 (4%) Strand=Plus/Plus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAAT--ATGTCG-CGGTATTGTTGCA-ATATT 138413 |||||||| || |||||||| || || | | |||| ||| | ||||| || || Sbjct 110186 ATCTCCCAGACAGTCTTGTACAGG----GACTTGACGTCGGCGGGAATGTTGGGGATGTT 110241 Query 138414 TTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAA 138473 || ||| || || | |||||||||||||| ||||| ||| | ||| | | Sbjct 110242 CTGGATGGAACCATTCTCGGCAATGATGCGATTCTTCATGCTATCAGACCAAAGA-CCCA 110300 Query 138474 CTTGATCAAG-TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTC 138532 | | |||| || || | ||| | ||| | |||||| || || ||||| | || | Sbjct 110301 TGTCAACAAGATCCTTGAGCAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGCACAC 110360 Query 138533 GACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAG 138592 |||| ||| |||||| ||| ||||||| || | |||||||| || || ||||| | Sbjct 110361 GACGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGGATCTGCG 110420 Query 138593 CCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGA 138652 || | || || |||||| |||||| | |||| || || | ||||| |||||| Sbjct 110421 AGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGACGCCGTGTTGCTTGA 110480 Query 138653 TTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGT 138712 | | ||| || | ||||||||| | || |||| || ||||||||| |||| Sbjct 110481 TCTGGCTCTTCAGGTCGGCCCAGTCCCAAAGGTCAGTAGGCTTGACGTTCCACATGTCGT 110540 Query 138713 ACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTT 138772 | || | || ||| |||| ||| || || | ||| || ||| | Sbjct 110541 ATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATAGGTGGAGTAGGGGCCTTCCTCCT 110600 Query 138773 GCGCCAACTCGTTGCTCGCCTCG---AGCGCACCATAGTAAATAGTTTCGGCAATCTGCT 138829 | || | | |||| | | | || ||| | | ||| || || || ||||||| Sbjct 110601 GAGCGAGC---TTGCATGACATGGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGCT 110657 Query 138830 GATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGG 138889 |||||| |||||| | ||| | ||||||||||| ||| || || | Sbjct 110658 TGTTGAGCTCCTTGGCCTCAGGAGACTCAAAGGGCATGCGGAGAGCAAGGAAAGCATCAG 110717 Query 138890 CCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCT 138948 ||| || || || || | || | || |||||||||| || ||| ||||| || Sbjct 110718 CCAAGCCCTGGACACCAAGGCCAATGGGCCGATGGCGCA----TGTTGCTGTTGCGAGCC 110773 Query 138949 TCGAT---AGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTA 139005 ||||| || |||| ||| || |||||||| |||| | || | ||||| |||| | Sbjct 110774 TCGATGACGGGGTAATGGTTCACGTCGATGATCCTGTTGAGGTTCCTGACGACGACCTGA 110833 Query 139006 GTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACA 139065 || || | | | || || || ||| ||||| || ||| | || Sbjct 110834 GTGACCTGGTGGAGCTTCTTGAAGTCATACACGCCGTTGTTGTAATCAACGTAGGCGGGC 110893 Query 139066 AATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTAT 139125 | | || | ||||| | |||||| || || || || ||||| | ||| Sbjct 110894 A-----GGGCCAGA----GAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTAC 110944 Query 139126 TCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTT 139185 |||||||| || | |||| || | || ||||| | || | || ||||| Sbjct 110945 TCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTC 111004 Query 139186 TTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCT 139245 || ||||| || ||| ||||| ||||| | || |||| || || || | ||| Sbjct 111005 TTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCG 111064 Query 139246 ATAATGAATTTGAACAAG--TC----CCTAGCTTGTATTTGACGCACGTAAAGTTCGTCG 139299 | | | | | ||| || ||| | | || ||| || | | | | Sbjct 111065 AGGACGGCGTACCA-AAGCTTCTGCGCCTTGATGGT-CTTGCGGCCCTT----GCCAGCC 111118 Query 139300 CGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCG 139358 ||||||||| ||||| | | || || ||| ||||||||| ||||| ||| | | Sbjct 111119 TTCTCGTACTTCTCGTACAAGGCCTCAAACTCG-TCACCGTAGCAGTCAGCAAGGCCAGG 111177 Query 139359 ACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAG 139418 |||| || || |||||||| | ||| |||||||| || ||| ||| ||||||| || Sbjct 111178 GCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAG 111237 Query 139419 ATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTT 139478 ||| || |||||||| || | | | |||||| || || ||| || ||| Sbjct 111238 ATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCGTGGTT 111297 Query 139479 ACGTTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCC 139536 || | | || |||||| || || || |||||||||||||| || || |||||||| Sbjct 111298 --CTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCA 111355 Query 139537 ATTGCGCCTTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACG 139593 | ||||| || ||||| || || || |||| || | | || ||||| ||| Sbjct 111356 AAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACG 111415 Query 139594 CGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATGGGACTGTTGC 139651 || | ||| ||| | ||| | | || |||||||||| ||| ||| | | Sbjct 111416 CGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGC--CGGCAATGTAAGAGCCAG 111473 Query 139652 GAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGC 139711 || |||| | ||| || || | || || || || | | ||||| || | | | Sbjct 111474 TGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCAC 111533 Query 139712 A-ATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAG 139770 | || | | || ||||| |||||| |||||||| |||| ||| ||||| ||| Sbjct 111534 AGGTCTTG-AGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAG 111592 Query 139771 CATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTG 139830 || ||||| || || | | |||||| || || || |||||| ||||| ||| Sbjct 111593 CAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGTGTG 111652 Query 139831 AACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGG 139890 || | || | ||||| | | |||||| || ||| | | | ||| | ||| | Sbjct 111653 AAGAATTTGCTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGTTGTCTCCCCAG 111712 Query 139891 ATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtt 139950 |||||||| || || ||||| | ||| || || || ||||| | | ||| || | Sbjct 111713 ATACCGACGGAAACACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTGCCGTCAAGC 111772 Query 139951 tttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || ||||| | || ||| ||||||||| |||||||||| |||||||| || Sbjct 111773 TTGAGGAGATAGGAACG--CTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTC 111828 >seq8335 Length=118861 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || ||||| |||||||| ||||| || | ||||| ||| | || Sbjct 14735 ATGCAAATCTTCGTCAAGACGCTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 14794 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || |||||||||||| Sbjct 14795 GACACGATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGATCAA 14854 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| || || || || ||||| ||||| | | | |||| || || ||| Sbjct 14855 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCTGACTACAAC 14914 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || || ||||| | || |||| || || Sbjct 14915 ATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 14961 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| ||||| || || || || || || || || | || Sbjct 14507 ATGCAGATCTTTGTCAAGACGCTGACCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCC 14566 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || |||||||| ||| Sbjct 14567 GACACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAA 14626 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||||| |||||| | | |||| || || ||| Sbjct 14627 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGTACTTTGTCCGACTACAAC 14686 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| || || || ||| Sbjct 14687 ATTCAGAAGGAGTCCACTCTTCAC 14710 >seq20113 Length=64481 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || |||||||| ||||| || | ||||| ||| | || Sbjct 11184 ATGCAAATCTTCGTCAAGACACTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 11243 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || |||||||| ||| Sbjct 11244 GACACGATCGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAA 11303 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| || || || || ||||| |||||| | | | |||| || || ||| Sbjct 11304 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTGTCTGACTACAAC 11363 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || || ||||| | || |||| || || Sbjct 11364 ATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 11410 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || ||||| || || | || Sbjct 10956 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCC 11015 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || |||||||| ||| Sbjct 11016 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAA 11075 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || ||||| |||||| | | |||| || || ||| Sbjct 11076 CAGCGCCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCCGACTACAAC 11135 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| ||||| || ||| Sbjct 11136 ATTCAGAAGGAGTCGACTCTTCAC 11159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449681750378960