Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq32817 134 1e-26 seq1113 84.2 2e-11 >seq32817 Length=24951 Score = 134 bits (148), Expect = 1e-26 Identities = 224/324 (69%), Gaps = 0/324 (0%) Strand=Plus/Minus Query 34311 GATGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACC 34370 ||||| || ||||| ||||| | || | | || | ||| ||||||| |||||| || Sbjct 19834 GATGACGTCCGTCTCAGGGTTCTTGCACTTCTTGCAAAGCACGAACTTGCTGATGAAGCC 19775 Query 34371 ATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 ||||| | ||||| | ||| | ||||||| ||||||| ||| | || |||| Sbjct 19774 GTCAAGGTGATCCTGCAGCTTGGGGCCATCGTGGGCACCGTTGATGATCCAACGATCGTC 19715 Query 34431 TTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAAT 34490 | || | | || || || || |||||| | ||||||||||| | |||| Sbjct 19714 GGCGGGGTCAATGTTGGTCTGGGCACCGAGCTCGAAACCGAAGTACTTGATGAGGTAGGC 19655 Query 34491 GGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCC 34550 | | || || | || | || ||||| || || |||||| ||||| ||||||||||| Sbjct 19654 GCCGGGGCGGGCCAGAGACTGGGCGACACTGGTCAGGTTGACAATGACGGTCTTGATGCC 19595 Query 34551 GTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610 |||||||| || || | ||||| || |||| ||| ||||||||||||||| ||| Sbjct 19594 ATTGCCCTTGCCCTCAATCTTGGTCTGGAGGCGCTCCATCTTGTAGCGGTAGAACTGGTC 19535 Query 34611 CGCCACATTGCGGTTAACGTTCAC 34634 || |||| ||| |||||| || Sbjct 19534 GGCGACATCGCGACGAACGTTGAC 19511 >seq1113 Length=471304 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 34521 GGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGAT 34580 || || |||||| ||||| ||||||||||| |||||||| || || | ||||| || Sbjct 429090 GGTCAGGTTGACAATGACGGTCTTGATGCCATTGCCCTTGCCCTCAATCTTGGTCTGGAG 429031 Query 34581 GCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGGTTAACGTTCAC 34634 ||| ||| ||||||||||||||| ||| || |||| ||| |||||| || Sbjct 429030 ACGCTCCATCTTGTAGCGGTAGAACTGGTCGGCGACATCGCGACGAACGTTGAC 428977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412648480698326