Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq8335 91.5 1e-13
seq20113 86.0 5e-12
>seq8335
Length=118861
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643
||||| ||||| || || |||||||| || || | | || ||| ||| || || ||
Sbjct 14709 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTCAAGCTGC 14650
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| ||||| | || | | || || || || ||||||||||| ||||| || ||| ||
Sbjct 14649 TTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTG-AATCTT 14591
Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762
| ||||| | || | ||||| ||| || || |||||||| || || ||||| ||
Sbjct 14590 CGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGT 14531
Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786
| || || ||||| ||||||||
Sbjct 14530 CAGCGTCTTGACAAAGATCTGCAT 14507
>seq20113
Length=64481
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643
||||| || || || || |||||||| || || | | || ||| ||| || || ||
Sbjct 11158 TGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGC 11099
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| |||||| | || | | || || || || ||||||||||| ||||| || ||| ||
Sbjct 11098 TTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTG-AATCTT 11040
Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762
| ||||| | || | ||||| ||| || || || ||||| || || ||||| ||
Sbjct 11039 GGACTTGACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGT 10980
Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786
| || || ||||| ||||||||
Sbjct 10979 CAGAGTCTTGACAAAGATCTGCAT 10956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385039001921862
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |