Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq31830 152 5e-32 seq336 136 4e-27 seq31807 116 4e-21 >seq31830 Length=311768 Score = 152 bits (168), Expect = 5e-32 Identities = 758/1182 (64%), Gaps = 49/1182 (4%) Strand=Plus/Plus Query 147253 GGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGA 147312 ||||| || ||| | || ||||| ||||| ||||||| ||| | ||| || || ||| Sbjct 110690 GGCATGCGGAGAGCAAGGAAAGCATCAGCCAAGCCCTGGACACCAAGGCCAATGGGCCGA 110749 Query 147313 TGCTTTTCGTTGCTGCGCTTCGCGC-TCGCT-ATGGGATAGTGGTTGCGATCAATAATCT 147370 || ||||||| | || || ||| | | ||| || ||||| || || ||| Sbjct 110750 TGGCGCATGTTGCTGT--TGCGAGCCTCGATGACGGGGTAATGGTTCACGTCGATGATCC 110807 Query 147371 TGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCC 147430 |||||||||| | || || || | ||| | | ||| |||| ||| ||||| | Sbjct 110808 TGTTGAGGTTCCTGACGACGACCTGAGTGACCTGGTGGAGCTTCTTGAAGTCATACACGC 110867 Query 147431 CGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCT 147490 ||| | | | ||| | | || ||| | ||| ||||| ||||||||||| || Sbjct 110868 CGTTGTTGTAATCAACGTAGGCGGGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCT 110927 Query 147491 CTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCA 147550 | |||| | ||||| || || || | |||||||||| || ||| || | Sbjct 110928 CATCGGGTGCCGAGTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAA 110987 Query 147551 AATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGG 147610 || | ||| ||||| || || ||||| || ||| |||||||| | || ||||| Sbjct 110988 GGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGG 111047 Query 147611 TCTCGACTTGCGTTTCAACGATAA---ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCC 147667 ||||| || | || | || ||| | || | |||||| | | || Sbjct 111048 TCTCGGTCTGAGCCTCGAGGACGGCGTACCAAAGC---TTCTGCGC-----CTTGATGGT 111099 Query 147668 GATAGCGGCCCTCG------TTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGT 147721 | |||||||| | || |||||| ||||||||| |||||||||||| |||| Sbjct 111100 CTT-GCGGCCCTTGCCAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGT 111158 Query 147722 AGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGT 147781 |||| || |||||||| || |||| | || ||||| || | ||| | ||| | | Sbjct 111159 AGCAGTCAGCAAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCT 111218 Query 147782 TAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGC 147841 || || ||| || ||||| || | ||||| || | |||||||| || || Sbjct 111219 CGACACGCTTCATGAAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGC---GC 111275 Query 147842 AATCCTCGGCGC--CCATGTTGCGTTTCAAA--TTAAGCA-CGCTATAGATGTCGGCGTG 147896 | |||| | || || | | || | | | ||| | | | | ||| || ||||| Sbjct 111276 GAACCTCCTCCTTGCCGTGGTTC-TTGCGGAGGTCAAGGAACTCGA-AGACATCAGCGTG 111333 Query 147897 CCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACATG 147953 ||| || |||| ||||| ||| | || || |||||| ||||||||||| || | Sbjct 111334 CCATGGCTCAAGGTAGATGGCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTA 111393 Query 147954 GCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT 148013 |||| || ||||||| || ||||| | |||||| | |||| | | |||||||||||| Sbjct 111394 GCGCGCCGTGTTGTTGAAGACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGT 111453 Query 148014 GGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG-TGCACGTTAACGCCAATGCCGCC-G 148071 | || | ||| ||| || | | || || ||||| | ||||| || || | Sbjct 111454 GCCGGCAATGTAAGAGCCAGTGGCACGGA-TGCGATGGACGTTCAGACCAATACCACCAG 111512 Query 148072 CCGTACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTAGATGCCGTCGATGCTGT 148129 || | ||| || || || ||| | | | || |||||| || || ||||||| Sbjct 111513 CCAT-CTTGGAGAT--CATGGCACAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGT 111569 Query 148130 CGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGA 148189 | | || | | ||| || || || || ||| || | |||| || || || Sbjct 111570 CATCCTTCATGTCAACCAGGAAGCAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGA 111629 Query 148190 AAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCAAT 148247 | ||||| ||| ||||| || || ||||| | || ||| | | ||||||||||| Sbjct 111630 AGAGGGTAGGAGATGCGTGTGTGAAGAATTTGCTGGA--CATGAGGTTGTACGTCTCAAT 111687 Query 148248 AGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGG 148307 | || | || ||| || || || | | || ||||| | ||||||||| || Sbjct 111688 GACACGCTCAACGTTGTCTCCCCAGATACCGACGGAAACACGCATAATCATGTGCTGCGG 111747 Query 148308 TCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAAC 148366 || ||||||| |||| || | |||||| ||||| | || ||||| ||| | | Sbjct 111748 GCGCTCGGCAATCTTG-CCGTCAAGCTTGAGGAGATAGGAACGCTCCAGGGTCTTGAAGC 111806 Query 148367 CAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 ||||||| | ||| | || || | ||||| | ||||||| Sbjct 111807 CAAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATGGCCG 111848 >seq336 Length=177044 Score = 136 bits (150), Expect = 4e-27 Identities = 496/763 (65%), Gaps = 35/763 (5%) Strand=Plus/Minus Query 147271 AAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGC 147330 || ||||| ||||| ||||||| ||| | ||| || || ||||| ||||||| Sbjct 111302 AAAGCATCAGCCAAGCCCTGGACACCAAGGCCAATGGGCCGATGGCGCATGTTGCTGT-- 111245 Query 147331 TTCGCGC-TCGCT-ATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTA 147388 | || || ||| | | ||| |||||||| || || ||| |||||||||| | || | Sbjct 111244 TGCGAGCCTCGATGACGGGGTAGTGGTTCACGTCGATGATCCTGTTGAGGTTCCTGACGA 111185 Query 147389 CAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGC 147448 | || | ||| | | ||| |||| ||| || || |||| | | | ||| Sbjct 111184 CGACCTGAGTCACCTGGTGGAGCTTCTTGAAGTCGTACACGCCGTTGTTGTAATCAACGT 111125 Query 147449 ATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACT 147508 | | || ||| | ||| ||||| ||||||||||| ||| |||| | ||||| Sbjct 111124 AGGCGGGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTACT 111065 Query 147509 GCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTT 147568 || || || | |||||||||| || ||| || | || | ||| ||||| | Sbjct 111064 CGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCT 111005 Query 147569 TCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAA 147628 | || ||||| || ||| |||||||| | || |||||||||| || | || | Sbjct 111004 TGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGA 110945 Query 147629 CGATAA---ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCG---- 147681 || ||| | || | |||||| | | || | |||||||| | Sbjct 110944 GGACGGCGTACCAAAGC---TTCTGCGC-----CTTGATGGTCTT-GCGGCCCTTGCCAG 110894 Query 147682 --TTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGG 147739 || |||||| ||||||||| |||||||||||| |||||||| || |||||||| | Sbjct 110893 CCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAG 110834 Query 147740 GACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACA 147799 | |||| | || ||||| || | ||| | ||| | | || || ||| || | Sbjct 110833 GGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGA 110774 Query 147800 GATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGC--CCAT 147857 |||| || | ||||| || | |||||||| || || | |||| | || | Sbjct 110773 GATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGC---GCGAACCTCCTCCTTGCCGT 110717 Query 147858 GTTGCGTTTCAAA--TTAAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGAC 147914 | | | || | | | ||| | | | | ||| || |||||||| || |||| ||||| Sbjct 110716 GGTTC-TTGCGGAGGTCAAGGAACTCGA-AGACATCAGCGTGCCATGGCTCAAGGTAGAT 110659 Query 147915 GGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAA 147971 ||| | || || |||||| ||||||||||| || | |||| || ||||||| || Sbjct 110658 GGCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAA 110599 Query 147972 CACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTG 148014 ||||| | |||||| | |||| | | ||||||||||||| Sbjct 110598 GACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTG 110556 >seq31807 Length=5160 Score = 116 bits (128), Expect = 4e-21 Identities = 377/576 (65%), Gaps = 31/576 (5%) Strand=Plus/Plus Query 147456 CACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGAT 147515 || ||| | ||| ||||| ||||||||||| ||| |||| | ||||| || || Sbjct 4486 CAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTACTCGACAAT 4545 Query 147516 TTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATT 147575 || | |||||||||| || ||| || | || | ||| ||||| || || || Sbjct 4546 CTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTT 4605 Query 147576 GCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAA- 147634 ||| || ||| |||||||| | || |||||||||| || | || | || Sbjct 4606 GCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGACGGC 4665 Query 147635 --ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCG------TTTTC 147686 ||| | || | |||||| | | || | |||||||| | || || Sbjct 4666 GTACCAAAGC---TTCTGCGC-----CTTGATGGTCTT-GCGGCCCTTGCCAGCCTTCTC 4716 Query 147687 GTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTG 147746 |||| ||||||||| |||||||||||| |||||||| || |||||||| || |||| Sbjct 4717 GTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTC 4776 Query 147747 ATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGG 147806 | || ||||| || | ||| | ||| | | || || ||| || ||||| || Sbjct 4777 GTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCGGG 4836 Query 147807 CACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGC--CCATGTTGCGT 147864 | ||||| || | |||||||| || || | |||| | || || | | | Sbjct 4837 GATCCACAAGGCCAGGAAGAGATCGCGAGC---GCGAACCTCCTCCTTGCCGTGGTTC-T 4892 Query 147865 TTCAAA--TTAAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGC 147921 | | | | ||| | | | | ||| || |||||||| || |||| ||||| ||| | Sbjct 4893 TGCGGAGGTCAAGGAACTCGA-AGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAA 4951 Query 147922 GCACCTTTACGCTTT---CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGC 147978 || || |||||| ||||||||||| || | |||| || ||||||| || ||||| Sbjct 4952 GCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCGA 5011 Query 147979 ACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTG 148014 | |||||| | |||| | | ||||||||||||| Sbjct 5012 AGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTG 5047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476382533861520