Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq20113 107 2e-18 seq8335 107 2e-18 seq3335 104 2e-17 >seq20113 Length=64481 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| || || || | || || |||||||| || ||||| Sbjct 11147 CTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAA 11088 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||| ||||| | ||||| | |||||||||| ||||| ||| | || Sbjct 11087 GATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGA-CGT 11029 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || || ||||| | ||||| || || || |||| ||| || | Sbjct 11028 TGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGA 10969 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 10968 CAAAGATCTGCAT 10956 >seq8335 Length=118861 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| ||| || || | || || |||||||| || || || Sbjct 14698 CTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAA 14639 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||| ||||| | ||||| | |||||||||| ||||| ||| | || Sbjct 14638 GATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGA-CGT 14580 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || |||||||| | ||||| || || || |||| || || | Sbjct 14579 TGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGA 14520 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 14519 CAAAGATCTGCAT 14507 >seq3335 Length=453419 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 41171 TGTGGATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACAAAGTCCA 41230 ||| ||||||||||| ||||||||| ||||| |||||||||| |||| ||||||| Sbjct 234283 TGTAGATGCGCTCGATGATCAGCTGGGCGACGCGATCACCCTCAGCCACCGCAAAGTCGG 234224 Query 41231 CGTCGTTGTTGTTCACCATCACTATGCCCACGTTGCCCGTGTAGTCGGGATCGATGACGC 41290 |||| || ||| | || || || || | ||| |||||||| ||| ||||||| Sbjct 234223 TGTCGGCGTGGTTGAACAGCAGGATCTTGACCTGGCCGCGGTAGTCGGCATCAATGACGC 234164 Query 41291 CAGCAGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGATCCTACCGT 41350 |||| | ||||||| |||||| | || || || || ||||| ||||| | |||| Sbjct 234163 CAGCGCCCGTGTCGATGAAGTGCTTGGAGGCGAGGCCAGAGCGGGGGGCGATGCGGCCGT 234104 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 41175 GATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACAAAGTCCACGTC 41234 ||||||||| | ||||||||| ||||| || ||||||| |||| ||||||| ||| Sbjct 249357 GATGCGCTCAATGATCAGCTGGGCGACGCGGTCACCCTCGGCCACCGCAAAGTCGGTGTC 249298 Query 41235 GTTGTTGTTCACCATCACTATGCCCACGTTGCCCGTGTAGTCGGGATCGATGACGCCAGC 41294 | || ||| | || | || || | ||| |||||||| ||| ||||||||||| Sbjct 249297 GGCGTGGTTGAACAGAAGGATCTTGACCTGGCCGCGGTAGTCGGCATCAATGACGCCAGC 249238 Query 41295 AGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGATCCTACCGT 41350 | ||||||| |||||| | || || || || ||||| ||||| | |||| Sbjct 249237 GCCCGTGTCGATGAAGTGCTTGGAGGCGAGGCCAGAGCGGGGGGCGATGCGGCCGT 249182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450577320500560