Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq20113 107 2e-18
seq8335 107 2e-18
seq3335 104 2e-17
>seq20113
Length=64481
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| ||||||||||| |||| || || || | || || |||||||| || |||||
Sbjct 11147 CTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAA 11088
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||| ||||| | ||||| | |||||||||| ||||| ||| | ||
Sbjct 11087 GATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGA-CGT 11029
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | |||||| || || ||||| | ||||| || || || |||| ||| || |
Sbjct 11028 TGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGA 10969
Query 35724 CAAATATCTGCAT 35736
|||| ||||||||
Sbjct 10968 CAAAGATCTGCAT 10956
>seq8335
Length=118861
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| ||||||||||| |||| ||| || || | || || |||||||| || || ||
Sbjct 14698 CTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAA 14639
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||| ||||| | ||||| | |||||||||| ||||| ||| | ||
Sbjct 14638 GATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGA-CGT 14580
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | |||||| || |||||||| | ||||| || || || |||| || || |
Sbjct 14579 TGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGA 14520
Query 35724 CAAATATCTGCAT 35736
|||| ||||||||
Sbjct 14519 CAAAGATCTGCAT 14507
>seq3335
Length=453419
Score = 104 bits (114), Expect = 2e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 41171 TGTGGATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACAAAGTCCA 41230
||| ||||||||||| ||||||||| ||||| |||||||||| |||| |||||||
Sbjct 234283 TGTAGATGCGCTCGATGATCAGCTGGGCGACGCGATCACCCTCAGCCACCGCAAAGTCGG 234224
Query 41231 CGTCGTTGTTGTTCACCATCACTATGCCCACGTTGCCCGTGTAGTCGGGATCGATGACGC 41290
|||| || ||| | || || || || | ||| |||||||| ||| |||||||
Sbjct 234223 TGTCGGCGTGGTTGAACAGCAGGATCTTGACCTGGCCGCGGTAGTCGGCATCAATGACGC 234164
Query 41291 CAGCAGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGATCCTACCGT 41350
|||| | ||||||| |||||| | || || || || ||||| ||||| | ||||
Sbjct 234163 CAGCGCCCGTGTCGATGAAGTGCTTGGAGGCGAGGCCAGAGCGGGGGGCGATGCGGCCGT 234104
Score = 87.8 bits (96), Expect = 2e-12
Identities = 125/176 (71%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 41175 GATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACAAAGTCCACGTC 41234
||||||||| | ||||||||| ||||| || ||||||| |||| ||||||| |||
Sbjct 249357 GATGCGCTCAATGATCAGCTGGGCGACGCGGTCACCCTCGGCCACCGCAAAGTCGGTGTC 249298
Query 41235 GTTGTTGTTCACCATCACTATGCCCACGTTGCCCGTGTAGTCGGGATCGATGACGCCAGC 41294
| || ||| | || | || || | ||| |||||||| ||| |||||||||||
Sbjct 249297 GGCGTGGTTGAACAGAAGGATCTTGACCTGGCCGCGGTAGTCGGCATCAATGACGCCAGC 249238
Query 41295 AGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGATCCTACCGT 41350
| ||||||| |||||| | || || || || ||||| ||||| | ||||
Sbjct 249237 GCCCGTGTCGATGAAGTGCTTGGAGGCGAGGCCAGAGCGGGGGGCGATGCGGCCGT 249182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450577320500560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |