Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq4446 102 1e-16
>seq4446
Length=444291
Score = 102 bits (112), Expect = 1e-16
Identities = 178/257 (69%), Gaps = 3/257 (1%)
Strand=Plus/Plus
Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973
|| || |||||||| || ||| ||||| || ||||| || |||| || |||| ||
Sbjct 123558 TCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGAGCCTCAGGAACC 123617
Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033
|| ||||| | || || | || | | || || || || || ||||| |||||||
Sbjct 123618 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 123677
Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGG--TG-TCAATTTATTCCAG 40090
|| || || | | ||| || || || |||||||| || || || ||||||
Sbjct 123678 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCATCATTGATCTTGTTGTTCCAG 123737
Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150
|| | || ||| || |||| ||| | ||||| || ||||| || || |||||||||||
Sbjct 123738 TCGTGGAGATCCTTAGATAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCTGCCTTC 123797
Query 40151 TTGTACATGTTCCATAT 40167
|||||||| | ||| ||
Sbjct 123798 TTGTACATTTGCCAAAT 123814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686579238330480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |