Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq20113 100 2e-16 seq8335 100 2e-16 >seq20113 Length=64481 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||||||| | || || || || || || |||||||| | Sbjct 11410 CCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAC 11351 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || |||||||| || || ||| |||| || |||||||| || || || Sbjct 11350 AGGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGG 11291 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||||||| || | | | || | ||||| | | ||| ||| Sbjct 11290 ATACCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGATGATTCGACT 11231 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || |||| || || || || || || || |||||||||||| Sbjct 11230 TCCAATGTGATAGTCTTACCGGTGAGTGTCTTGACGAAGATTTGCATA 11183 >seq8335 Length=118861 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||||||| | || || || || || || |||||||| | Sbjct 14961 CCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAC 14902 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| || ||||| || || ||| |||| || ||||||||||| || || Sbjct 14901 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGA 14842 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| |||| | || | ||||| | | ||| ||| Sbjct 14841 ATGCCCTCCTTGTCTTGGATCTTGGACTTCACATTGTCGATCGTGTCGGATGATTCGACT 14782 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || |||| || || || || || || || |||||||||||| Sbjct 14781 TCCAATGTGATAGTCTTACCGGTGAGCGTCTTGACGAAGATTTGCATA 14734 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| ||||||||| || | || | || || ||||| || || Sbjct 14703 GTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTCAAGCTGCTTTCCA 14644 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | |||||||||||||| || || || | |||||| || || ||||| || Sbjct 14643 GCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTG 14584 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || ||||| || | ||||| ||||| || Sbjct 14583 ACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGCGTC 14524 Query 27231 TTCACAAAGATTTGCATA 27248 || |||||||| |||||| Sbjct 14523 TTGACAAAGATCTGCATA 14506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424735623920784