Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq8335 163 9e-35
seq20113 154 4e-32
seq23891 87.8 5e-12
>seq8335
Length=118861
Score = 163 bits (180), Expect = 9e-35
Identities = 177/235 (75%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | ||||| || |||||||| ||||| || ||||| || |
Sbjct 14741 TTTGCATACCACCACGGAGGCGGAGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGT 14682
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || || || || ||||| ||||| || |||||||| ||||| ||||| || || |
Sbjct 14681 AGTCGGACAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGT 14622
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| |||||||| || || || |||||||| || | || || || ||||| | || || |
Sbjct 14621 CGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAG 14562
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || ||||| || | ||||| ||||| || || || ||||| ||||||||
Sbjct 14561 ACTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 14507
>seq20113
Length=64481
Score = 154 bits (170), Expect = 4e-32
Identities = 175/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | ||||| || |||||||| ||||| || ||||| || |
Sbjct 11190 TTTGCATACCACCACGAAGGCGGAGAACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGT 11131
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| ||||| || |||||||||||||| || || || || |
Sbjct 11130 AGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGT 11071
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| |||||||| || || || |||||||| || | || || || || || | || || |
Sbjct 11070 CGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAG 11011
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || || || | ||||| ||||| || || || ||||| ||||||||
Sbjct 11010 ACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 10956
>seq23891
Length=52563
Score = 87.8 bits (96), Expect = 5e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 378249 AGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTC 378308
||| || || ||||||||||| | ||| |||||||| |||| || |||||||| |||||
Sbjct 81 AGTCTTGACAGCAGTATCAATAAGACCCTCACGACCAGCCATGGCGTGGAAGAAGAATTC 140
Query 378309 AGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATC 378368
||||||| || |||| | | | || |||||| || || | || | || || |
Sbjct 141 GCTAGGAGTGAGGCCACGGAGATACGAGTTCTCAACGAAACCGCGGGCTTCAGGAGAGTA 200
Query 378369 ATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCC 378428
||||| || || | ||||| | || || | || || || | ||||| || |||||
Sbjct 201 ATCATCCTTGGTGAAGTGAGGCAGAGTGCGGTACTTGAAGCCGAAAGGAATACGCTTTCC 260
Query 378429 ATCAACATTCTGTTGACC 378446
|| || | || |||||
Sbjct 261 CTCGACGATTTGCTGACC 278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1514509244290746
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |