Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq31830 275 7e-69 seq336 275 7e-69 seq31807 188 8e-43 seq2447 100 3e-16 seq37228 82.4 8e-11 >seq31830 Length=311768 Score = 275 bits (304), Expect = 7e-69 Identities = 515/753 (68%), Gaps = 18/753 (2%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || || | |||||| || ||| || ||||||| |||||||||| || Sbjct 111732 ATGCGTGTTTCCGTCGGTATCTGGGGAGACAACGTTGAGCGTGTCATTGAGACGTACAAC 111673 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | ||| | || | ||| || ||||| | || ||||| ||||||||||| ||| | Sbjct 111672 CTCATGTCCAGCAAATTCTTCACACACGCATCTCCTACCCTCTTCAACGCTGGCACGCCT 111613 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || ||||| ||||| |||||||||||| | |||||||||||| || || || ||| Sbjct 111612 CAGGCTCAGCTGTCGTCCTGCTTCCTGGTTGACATGAAGGATGACAGCATTGAAGGTATC 111553 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 ||||| || |||||| |||||| ||||||||| | | |||||||| ||| | || Sbjct 111552 TACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGTCTGAAC 111493 Query 53435 TGC--TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | ||| | ||||||| | ||| | || || || |||||| | | | Sbjct 111492 GTCCATCGCA--TCCGTGCCACTGGCTCTTACATTGCCGGCACCAACGGCACTTCAAACG 111435 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||| ||| ||||| |||||||||||||||||||| || ||||| ||||||| || Sbjct 111434 GCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGCGGCA 111375 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | || ||||||||||| ||||| |||||||| || | | |||| Sbjct 111374 ACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTCTTCGAGT 111315 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | || || || || ||| || || | || ||| | ||| || || || || | Sbjct 111314 TCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCTCGCGATCTCTTCCTGG 111255 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | ||||||| || || ||||||||| | || |||||| ||| || ||| || | Sbjct 111254 CCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACTGGACTCTCA 111195 Query 53733 TGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATG 53791 ||||||| ||||||||||| |||| | | | || ||||||||| |||||| | | || Sbjct 111194 TGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTG-CTACGGTGACGAGTTTGAGGCCTTG 111136 Query 53792 TATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAG 53845 || || |||| || | |||||||| |||| ||||||||| || Sbjct 111135 TACGAGAAGTACGAGAAGGCTGGCAAGGGCCGC------AAGACCATCAAGGCGCAGAAG 111082 Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905 | ||| | || ||||| || ||| ||||| || | || | |||| ||||||| Sbjct 111081 CTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAG 111022 Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||| |||| |||||||||||||||||| Sbjct 111021 GATCACTGCAACCGCAAGAGCAACCAGAAGAAC 110989 Score = 104 bits (114), Expect = 3e-17 Identities = 299/447 (67%), Gaps = 25/447 (6%) Strand=Plus/Minus Query 55493 CTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCG 55552 || ||||||||||| ||||| || || || | |||||| | |||||||||||| Sbjct 110454 CTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGC 110395 Query 55553 TTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATG 55612 |||||||| |||||| |||||||||||| ||| || || || || ||||| || | Sbjct 110394 TTCGAGCCTTACACGTCCAACATCTACCAGCGTCGTGTGCTCGCCGGCGAGTTC--CAGG 110337 Query 55613 ATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG-AT 55668 || ||| | | || ||||||| || | || ||| | || || Sbjct 110336 -TCGTCAACCCCTGGCTGCTCAAGGATCTTGTTGACATGGGTCTTTGGT-CTGATAGCAT 110279 Query 55669 CAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCCTCT 55722 |||| || || |||| ||| || ||| ||||||| | | ||||| | Sbjct 110278 GAAGAATCGCATCATTGCCGAGAATGGT---TCCATCCAGAACATCCCCAACATTCC-CG 110223 Query 55723 GCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACA 55781 || | ||||| | ||| ||| || ||||||||| | ||| | | | | | Sbjct 110222 CCGACGTCAAGTCCCTGTACAAGACTGTCTGGGAGATTTCTCAGCGCACCGTTGTGCAGA 110163 Query 55782 TGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGA 55841 || ||| ||||||||||| | |||||||||||||||||| ||||||| |||| || Sbjct 110162 TGGCTGCCGATCGTGGTGCCTTCATCGACCAGTCCCAGTCCTTGAACATTCACATGAAGG 110103 Query 55842 ATCCTTCACTGGCCAAGTT---GAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCA 55898 | ||| | ||| |||| | |||| |||||||| ||| |||||| || |||| Sbjct 110102 ACCCTACCATGGGCAAGATCACGAGC---ATGCACTTCGCCGGCTGGAAGCTTGGCCTCA 110046 Query 55899 AGACGGGTATGTACTATCTGCGGACCC 55925 |||| || |||||||| ||||| |||| Sbjct 110045 AGACCGGCATGTACTACCTGCGCACCC 110019 >seq336 Length=177044 Score = 275 bits (304), Expect = 7e-69 Identities = 515/753 (68%), Gaps = 18/753 (2%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || || | |||||| || ||| || ||||||| |||||||||| || Sbjct 110278 ATGCGTGTGTCCGTTGGTATCTGGGGAGACAACGTTGAGCGTGTCATTGAGACGTACAAC 110337 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | ||| | | || | ||| || |||||| | || ||||| ||||||||||| ||| Sbjct 110338 CTCATGTCCAACAAATTCTTCACACACGCCTCTCCTACCCTCTTCAACGCTGGCACGCCC 110397 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || ||||| ||||| |||||||||||| | ||||||||||| || || || ||| Sbjct 110398 CAGGCTCAGCTGTCGTCCTGCTTCCTGGTCGACATGAAGGATGATAGCATTGAAGGTATC 110457 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 ||||| || |||||| |||||| ||||||||| | | |||||||| ||| | || Sbjct 110458 TACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGTCTGAAC 110517 Query 53435 TGC--TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | ||| | ||||||| | ||| | || || || |||||| | | | Sbjct 110518 GTCCATCGCA--TCCGTGCCACTGGCTCTTACATTGCCGGCACCAACGGCACTTCAAACG 110575 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||| ||| ||||| |||||||||||||||||||| || ||||| ||||||| || Sbjct 110576 GCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGCGGCA 110635 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | || ||||||||||| ||||| |||||||| || | | |||| Sbjct 110636 ACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTCTTCGAGT 110695 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | || || || || ||| || || | || ||| | ||| || || || || | Sbjct 110696 TCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCTCGCGATCTCTTCCTGG 110755 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | ||||||| || || ||||||||| | || |||||| ||| || ||| || | Sbjct 110756 CCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACTGGACTCTCA 110815 Query 53733 TGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATG 53791 ||||||| ||||||||||| |||| | | | || ||||||||| |||||| | | || Sbjct 110816 TGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTG-CTACGGTGACGAGTTTGAGGCCTTG 110874 Query 53792 TATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAG 53845 || || |||| || | |||||||| |||| ||||||||| || Sbjct 110875 TACGAGAAGTACGAGAAGGCTGGCAAGGGCCGC------AAGACCATCAAGGCGCAGAAG 110928 Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905 | ||| | || ||||| || ||| ||||| || | || | |||| ||||||| Sbjct 110929 CTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAG 110988 Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||| |||| |||||||||||||||||| Sbjct 110989 GATCACTGCAACCGCAAGAGCAACCAGAAGAAC 111021 Score = 100 bits (110), Expect = 3e-16 Identities = 134/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 55744 GACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTA 55803 ||| || ||||||||| | ||| | | || | ||| ||| ||||||||||| | Sbjct 112789 GACTGTCTGGGAGATTTCTCAGCGCACCGTCGTTCAGATGGCTGCCGATCGTGGTGCCTT 112848 Query 55804 CATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTT--- 55860 |||||||||||| ||||| ||||||| |||| || | ||| | ||| |||| | Sbjct 112849 CATCGACCAGTCTCAGTCCTTGAACATTCACATGAAGGACCCTACCATGGGCAAGATCAC 112908 Query 55861 GAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCG 55920 |||| |||||||| ||| |||||| || |||||||| || |||||||| ||||| Sbjct 112909 GAGC---ATGCACTTCGCCGGCTGGAAGCTTGGCCTCAAGACCGGCATGTACTACCTGCG 112965 Query 55921 GACCC 55925 |||| Sbjct 112966 CACCC 112970 >seq31807 Length=5160 Score = 188 bits (208), Expect = 8e-43 Identities = 395/585 (68%), Gaps = 18/585 (3%) Strand=Plus/Minus Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || || |||||||| || |||||| |||||| ||||||||| | | |||||| Sbjct 5157 ATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGT 5098 Query 53423 ATCGGTATCCACTGC--TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 || ||| | || | ||| | ||||||| | ||| | || || || |||| Sbjct 5097 ATTGGTCTGAACGTCCATCGCA--TCCGTGCCACTGGCTCTTACATTGCCGGCACCAACG 5040 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 || | | || ||| ||| ||||| |||||||||||||||||||| || ||||| Sbjct 5039 GCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTG 4980 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 ||||||| || ||||| || | || ||||||||||| ||||| |||||||| | Sbjct 4979 ACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTG 4920 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTG 53660 | | | ||||| || || || || ||| || || | || ||| | ||| || | Sbjct 4919 ATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCTCGCG 4860 Query 53661 ACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720 | || || || ||||||| || || ||||||||| | || |||||| ||| | Sbjct 4859 ATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCG 4800 Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAG 53779 | ||| || |||||||| ||||||||||| |||| | | | || ||||||||| ||| Sbjct 4799 ACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTG-CTACGGTGACGAG 4741 Query 53780 TTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTC 53833 ||| | | |||| || |||| || | |||||||| |||| || Sbjct 4740 TTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGC------AAGACCATC 4687 Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893 ||||||| || | ||| | || ||||| || ||| ||||| || | || | | Sbjct 4686 AAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTC 4627 Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||| |||||||||| |||| |||||||||||||||||| Sbjct 4626 ATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAAC 4582 >seq2447 Length=159155 Score = 100 bits (110), Expect = 3e-16 Identities = 206/304 (68%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 ||| |||||| ||| || |||| |||||| || || ||||| || || || | || Sbjct 29296 CAAGCGCGTGTGGATATAACGGGGGCTGGCAGCGTCTGATCCACCGGCAAGACGAGAACC 29237 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 || | ||| |||||||||| ||||| ||||| | || || || ||||| || | Sbjct 29236 GAAGTTACCACTGGGCTCGAGGCAGTTGACATTGTTTGAACCGACAAAGTTCTGGGCGAG 29177 Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201 | ||||| || ||| | |||||||||||| ||||| | || || | | Sbjct 29176 GCCAATGATCGTCTGTTGAAGAGACATTTCACCGTGGTGGTACGCGGCCTTTTCGGAAAC 29117 Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261 || || ||||| | | | |||||| ||| | | ||||| |||||| || ||| | Sbjct 29116 ATAACCGGCCAATTCCACGACCTTCTGGTCTTTGATGAGGTTTCTCTTGAAGCAAGCGAA 29057 Query 152262 AATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGA-GGAATCGAACGCTTGA 152320 || ||||| ||||| ||||||| |||||| | || ||| ||||| |||||| | Sbjct 29056 CATGACCTTCCGCTGACCAGGTTTCAGACCGTCAAGAAC-TGACGGAATGGAACGCATAT 28998 Query 152321 TGTC 152324 |||| Sbjct 28997 TGTC 28994 >seq37228 Length=14314 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 55493 CTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCG 55552 || ||||||||||| ||||| || || || | |||||| | |||||||||||| Sbjct 14172 CTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGC 14231 Query 55553 TTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTT 55605 |||||||| |||||| |||||||||||| ||| || || || || ||||| Sbjct 14232 TTCGAGCCTTACACGTCCAACATCTACCAGCGTCGTGTGCTCGCCGGCGAGTT 14284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546953459443600