Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq31830 275 7e-69
seq336 275 7e-69
seq31807 188 8e-43
seq2447 100 3e-16
seq37228 82.4 8e-11
>seq31830
Length=311768
Score = 275 bits (304), Expect = 7e-69
Identities = 515/753 (68%), Gaps = 18/753 (2%)
Strand=Plus/Minus
Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254
||||| || || | |||||| || ||| || ||||||| |||||||||| ||
Sbjct 111732 ATGCGTGTTTCCGTCGGTATCTGGGGAGACAACGTTGAGCGTGTCATTGAGACGTACAAC 111673
Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314
| ||| | || | ||| || ||||| | || ||||| ||||||||||| ||| |
Sbjct 111672 CTCATGTCCAGCAAATTCTTCACACACGCATCTCCTACCCTCTTCAACGCTGGCACGCCT 111613
Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374
|| ||||| ||||| |||||||||||| | |||||||||||| || || || |||
Sbjct 111612 CAGGCTCAGCTGTCGTCCTGCTTCCTGGTTGACATGAAGGATGACAGCATTGAAGGTATC 111553
Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434
||||| || |||||| |||||| ||||||||| | | |||||||| ||| | ||
Sbjct 111552 TACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGTCTGAAC 111493
Query 53435 TGC--TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492
| ||| | ||||||| | ||| | || || || |||||| | | |
Sbjct 111492 GTCCATCGCA--TCCGTGCCACTGGCTCTTACATTGCCGGCACCAACGGCACTTCAAACG 111435
Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552
| ||| ||| ||||| |||||||||||||||||||| || ||||| ||||||| ||
Sbjct 111434 GCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGCGGCA 111375
Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612
||||| || | || ||||||||||| ||||| |||||||| || | | ||||
Sbjct 111374 ACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTCTTCGAGT 111315
Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672
| || || || || ||| || || | || ||| | ||| || || || || |
Sbjct 111314 TCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCTCGCGATCTCTTCCTGG 111255
Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732
| ||||||| || || ||||||||| | || |||||| ||| || ||| || |
Sbjct 111254 CCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACTGGACTCTCA 111195
Query 53733 TGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATG 53791
||||||| ||||||||||| |||| | | | || ||||||||| |||||| | | ||
Sbjct 111194 TGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTG-CTACGGTGACGAGTTTGAGGCCTTG 111136
Query 53792 TATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAG 53845
|| || |||| || | |||||||| |||| ||||||||| ||
Sbjct 111135 TACGAGAAGTACGAGAAGGCTGGCAAGGGCCGC------AAGACCATCAAGGCGCAGAAG 111082
Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905
| ||| | || ||||| || ||| ||||| || | || | |||| |||||||
Sbjct 111081 CTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAG 111022
Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
||| |||| ||||||||||||||||||
Sbjct 111021 GATCACTGCAACCGCAAGAGCAACCAGAAGAAC 110989
Score = 104 bits (114), Expect = 3e-17
Identities = 299/447 (67%), Gaps = 25/447 (6%)
Strand=Plus/Minus
Query 55493 CTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCG 55552
|| ||||||||||| ||||| || || || | |||||| | ||||||||||||
Sbjct 110454 CTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGC 110395
Query 55553 TTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATG 55612
|||||||| |||||| |||||||||||| ||| || || || || ||||| || |
Sbjct 110394 TTCGAGCCTTACACGTCCAACATCTACCAGCGTCGTGTGCTCGCCGGCGAGTTC--CAGG 110337
Query 55613 ATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG-AT 55668
|| ||| | | || ||||||| || | || ||| | || ||
Sbjct 110336 -TCGTCAACCCCTGGCTGCTCAAGGATCTTGTTGACATGGGTCTTTGGT-CTGATAGCAT 110279
Query 55669 CAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCCTCT 55722
|||| || || |||| ||| || ||| ||||||| | | ||||| |
Sbjct 110278 GAAGAATCGCATCATTGCCGAGAATGGT---TCCATCCAGAACATCCCCAACATTCC-CG 110223
Query 55723 GCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACA 55781
|| | ||||| | ||| ||| || ||||||||| | ||| | | | | |
Sbjct 110222 CCGACGTCAAGTCCCTGTACAAGACTGTCTGGGAGATTTCTCAGCGCACCGTTGTGCAGA 110163
Query 55782 TGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGA 55841
|| ||| ||||||||||| | |||||||||||||||||| ||||||| |||| ||
Sbjct 110162 TGGCTGCCGATCGTGGTGCCTTCATCGACCAGTCCCAGTCCTTGAACATTCACATGAAGG 110103
Query 55842 ATCCTTCACTGGCCAAGTT---GAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCA 55898
| ||| | ||| |||| | |||| |||||||| ||| |||||| || ||||
Sbjct 110102 ACCCTACCATGGGCAAGATCACGAGC---ATGCACTTCGCCGGCTGGAAGCTTGGCCTCA 110046
Query 55899 AGACGGGTATGTACTATCTGCGGACCC 55925
|||| || |||||||| ||||| ||||
Sbjct 110045 AGACCGGCATGTACTACCTGCGCACCC 110019
>seq336
Length=177044
Score = 275 bits (304), Expect = 7e-69
Identities = 515/753 (68%), Gaps = 18/753 (2%)
Strand=Plus/Plus
Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254
||||| || || | |||||| || ||| || ||||||| |||||||||| ||
Sbjct 110278 ATGCGTGTGTCCGTTGGTATCTGGGGAGACAACGTTGAGCGTGTCATTGAGACGTACAAC 110337
Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314
| ||| | | || | ||| || |||||| | || ||||| ||||||||||| |||
Sbjct 110338 CTCATGTCCAACAAATTCTTCACACACGCCTCTCCTACCCTCTTCAACGCTGGCACGCCC 110397
Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374
|| ||||| ||||| |||||||||||| | ||||||||||| || || || |||
Sbjct 110398 CAGGCTCAGCTGTCGTCCTGCTTCCTGGTCGACATGAAGGATGATAGCATTGAAGGTATC 110457
Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434
||||| || |||||| |||||| ||||||||| | | |||||||| ||| | ||
Sbjct 110458 TACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGTCTGAAC 110517
Query 53435 TGC--TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492
| ||| | ||||||| | ||| | || || || |||||| | | |
Sbjct 110518 GTCCATCGCA--TCCGTGCCACTGGCTCTTACATTGCCGGCACCAACGGCACTTCAAACG 110575
Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552
| ||| ||| ||||| |||||||||||||||||||| || ||||| ||||||| ||
Sbjct 110576 GCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGCGGCA 110635
Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612
||||| || | || ||||||||||| ||||| |||||||| || | | ||||
Sbjct 110636 ACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTCTTCGAGT 110695
Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672
| || || || || ||| || || | || ||| | ||| || || || || |
Sbjct 110696 TCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCTCGCGATCTCTTCCTGG 110755
Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732
| ||||||| || || ||||||||| | || |||||| ||| || ||| || |
Sbjct 110756 CCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACTGGACTCTCA 110815
Query 53733 TGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATG 53791
||||||| ||||||||||| |||| | | | || ||||||||| |||||| | | ||
Sbjct 110816 TGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTG-CTACGGTGACGAGTTTGAGGCCTTG 110874
Query 53792 TATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAG 53845
|| || |||| || | |||||||| |||| ||||||||| ||
Sbjct 110875 TACGAGAAGTACGAGAAGGCTGGCAAGGGCCGC------AAGACCATCAAGGCGCAGAAG 110928
Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905
| ||| | || ||||| || ||| ||||| || | || | |||| |||||||
Sbjct 110929 CTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAG 110988
Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
||| |||| ||||||||||||||||||
Sbjct 110989 GATCACTGCAACCGCAAGAGCAACCAGAAGAAC 111021
Score = 100 bits (110), Expect = 3e-16
Identities = 134/185 (72%), Gaps = 6/185 (3%)
Strand=Plus/Plus
Query 55744 GACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTA 55803
||| || ||||||||| | ||| | | || | ||| ||| ||||||||||| |
Sbjct 112789 GACTGTCTGGGAGATTTCTCAGCGCACCGTCGTTCAGATGGCTGCCGATCGTGGTGCCTT 112848
Query 55804 CATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTT--- 55860
|||||||||||| ||||| ||||||| |||| || | ||| | ||| |||| |
Sbjct 112849 CATCGACCAGTCTCAGTCCTTGAACATTCACATGAAGGACCCTACCATGGGCAAGATCAC 112908
Query 55861 GAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCG 55920
|||| |||||||| ||| |||||| || |||||||| || |||||||| |||||
Sbjct 112909 GAGC---ATGCACTTCGCCGGCTGGAAGCTTGGCCTCAAGACCGGCATGTACTACCTGCG 112965
Query 55921 GACCC 55925
||||
Sbjct 112966 CACCC 112970
>seq31807
Length=5160
Score = 188 bits (208), Expect = 8e-43
Identities = 395/585 (68%), Gaps = 18/585 (3%)
Strand=Plus/Minus
Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422
|| || || |||||||| || |||||| |||||| ||||||||| | | ||||||
Sbjct 5157 ATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGT 5098
Query 53423 ATCGGTATCCACTGC--TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480
|| ||| | || | ||| | ||||||| | ||| | || || || ||||
Sbjct 5097 ATTGGTCTGAACGTCCATCGCA--TCCGTGCCACTGGCTCTTACATTGCCGGCACCAACG 5040
Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540
|| | | || ||| ||| ||||| |||||||||||||||||||| || |||||
Sbjct 5039 GCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTG 4980
Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600
||||||| || ||||| || | || ||||||||||| ||||| |||||||| |
Sbjct 4979 ACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTG 4920
Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTG 53660
| | | ||||| || || || || ||| || || | || ||| | ||| || |
Sbjct 4919 ATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCTCGCG 4860
Query 53661 ACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720
| || || || ||||||| || || ||||||||| | || |||||| ||| |
Sbjct 4859 ATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCG 4800
Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAG 53779
| ||| || |||||||| ||||||||||| |||| | | | || ||||||||| |||
Sbjct 4799 ACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTG-CTACGGTGACGAG 4741
Query 53780 TTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTC 53833
||| | | |||| || |||| || | |||||||| |||| ||
Sbjct 4740 TTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGC------AAGACCATC 4687
Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893
||||||| || | ||| | || ||||| || ||| ||||| || | || | |
Sbjct 4686 AAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTC 4627
Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
||| |||||||||| |||| ||||||||||||||||||
Sbjct 4626 ATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAAC 4582
>seq2447
Length=159155
Score = 100 bits (110), Expect = 3e-16
Identities = 206/304 (68%), Gaps = 2/304 (1%)
Strand=Plus/Minus
Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081
||| |||||| ||| || |||| |||||| || || ||||| || || || | ||
Sbjct 29296 CAAGCGCGTGTGGATATAACGGGGGCTGGCAGCGTCTGATCCACCGGCAAGACGAGAACC 29237
Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141
|| | ||| |||||||||| ||||| ||||| | || || || ||||| || |
Sbjct 29236 GAAGTTACCACTGGGCTCGAGGCAGTTGACATTGTTTGAACCGACAAAGTTCTGGGCGAG 29177
Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201
| ||||| || ||| | |||||||||||| ||||| | || || | |
Sbjct 29176 GCCAATGATCGTCTGTTGAAGAGACATTTCACCGTGGTGGTACGCGGCCTTTTCGGAAAC 29117
Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261
|| || ||||| | | | |||||| ||| | | ||||| |||||| || ||| |
Sbjct 29116 ATAACCGGCCAATTCCACGACCTTCTGGTCTTTGATGAGGTTTCTCTTGAAGCAAGCGAA 29057
Query 152262 AATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGA-GGAATCGAACGCTTGA 152320
|| ||||| ||||| ||||||| |||||| | || ||| ||||| |||||| |
Sbjct 29056 CATGACCTTCCGCTGACCAGGTTTCAGACCGTCAAGAAC-TGACGGAATGGAACGCATAT 28998
Query 152321 TGTC 152324
||||
Sbjct 28997 TGTC 28994
>seq37228
Length=14314
Score = 82.4 bits (90), Expect = 8e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 55493 CTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCG 55552
|| ||||||||||| ||||| || || || | |||||| | ||||||||||||
Sbjct 14172 CTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGC 14231
Query 55553 TTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTT 55605
|||||||| |||||| |||||||||||| ||| || || || || |||||
Sbjct 14232 TTCGAGCCTTACACGTCCAACATCTACCAGCGTCGTGTGCTCGCCGGCGAGTT 14284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546953459443600
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