Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq669 102 7e-17 >seq669 Length=171934 Score = 102 bits (112), Expect = 7e-17 Identities = 268/403 (67%), Gaps = 12/403 (3%) Strand=Plus/Plus Query 30062 ACGTAAAACTGAC---ACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30118 |||||||||||| ||||| ||||| || || || ||||| || || Sbjct 135416 ACGTAAAACTGAGCAAACATG---TGGCAGGGCGGCAGCGCCATCTTCTTCAGGTGCGCC 135472 Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30178 |||||||| |||| | ||||||||||| || | || ||| || ||| || || Sbjct 135473 GGGTTCCATGCGCTGAGGATGATGCGCCGATCGTACGGATTGGTCTTGAGCTTGTGGACA 135532 Query 30179 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30238 | | |||||| || || || |||| |||||| | | || || |||||| Sbjct 135533 ATCTCTGCCAGCTGGTCGACACCTTGACCCGTGTAGTCCGTCTTCGCATCAACGTACTCG 135592 Query 30239 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30298 || ||||| |||| ||| ||||| ||||| || || || ||||| || | || | |||| Sbjct 135593 GCACCGAAGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACCTCGCGGTGC 135652 Query 30299 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 30358 || ||| |||| | || || | || |||||| ||||||||||||| | ||| Sbjct 135653 GAGAGTCCCACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCC 135712 Query 30359 TTCTCAGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCAC 30417 ||| ||| | |||| ||| |||| | |||||||||| ||||| | || Sbjct 135713 GCCTCGCTCAGCGGTATGGACGACGTGCTGCCCTGT-ACGAACCACAAAAGCTCGGCGAC 135771 Query 30418 GACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 30458 |||||| | || ||||| | ||| ||||| || ||||||| Sbjct 135772 GACGGC--GCGAAGGAAGACGCGCTTTGTCGTCAGCAGGGGAA 135812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406120335867144