Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq669 102 7e-17
>seq669
Length=171934
Score = 102 bits (112), Expect = 7e-17
Identities = 268/403 (67%), Gaps = 12/403 (3%)
Strand=Plus/Plus
Query 30062 ACGTAAAACTGAC---ACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30118
|||||||||||| ||||| ||||| || || || ||||| || ||
Sbjct 135416 ACGTAAAACTGAGCAAACATG---TGGCAGGGCGGCAGCGCCATCTTCTTCAGGTGCGCC 135472
Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30178
|||||||| |||| | ||||||||||| || | || ||| || ||| || ||
Sbjct 135473 GGGTTCCATGCGCTGAGGATGATGCGCCGATCGTACGGATTGGTCTTGAGCTTGTGGACA 135532
Query 30179 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30238
| | |||||| || || || |||| |||||| | | || || ||||||
Sbjct 135533 ATCTCTGCCAGCTGGTCGACACCTTGACCCGTGTAGTCCGTCTTCGCATCAACGTACTCG 135592
Query 30239 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30298
|| ||||| |||| ||| ||||| ||||| || || || ||||| || | || | ||||
Sbjct 135593 GCACCGAAGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACCTCGCGGTGC 135652
Query 30299 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 30358
|| ||| |||| | || || | || |||||| ||||||||||||| | |||
Sbjct 135653 GAGAGTCCCACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCC 135712
Query 30359 TTCTCAGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCAC 30417
||| ||| | |||| ||| |||| | |||||||||| ||||| | ||
Sbjct 135713 GCCTCGCTCAGCGGTATGGACGACGTGCTGCCCTGT-ACGAACCACAAAAGCTCGGCGAC 135771
Query 30418 GACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 30458
|||||| | || ||||| | ||| ||||| || |||||||
Sbjct 135772 GACGGC--GCGAAGGAAGACGCGCTTTGTCGTCAGCAGGGGAA 135812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406120335867144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |