Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq8335 134 1e-26
seq20113 131 1e-25
>seq8335
Length=118861
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || || ||||| ||| |||| || | ||||| ||| | |||
Sbjct 14735 ATGCAAATCTTCGTCAAGACGCTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 14794
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| || | || || || || |||||||| || ||||| || |||||||||
Sbjct 14795 GACACGATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGATCAA 14854
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||| ||||| || | || ||| | ||| | || || ||||||
Sbjct 14855 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCTGACTACAAC 14914
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || |||||||||||| | |||||||| | ||| |||| |||||
Sbjct 14915 ATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 14961
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || |||||||||||| | || |||||||| ||||| | |||
Sbjct 14507 ATGCAGATCTTTGTCAAGACGCTGACCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCC 14566
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | ||||| || ||||| ||||| || || || || ||||| |||
Sbjct 14567 GACACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAA 14626
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||| || || || | || || || || | ||||| ||||||
Sbjct 14627 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGTACTTTGTCCGACTACAAC 14686
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| |||||||| || | || | ||| | || | || ||||| ||
Sbjct 14687 ATTCAGAAGGAGTCCACTCTTCACCTCGTTCTCCGCCTCCGTGGTGGTAT 14736
>seq20113
Length=64481
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || || ||||| ||| |||| || | ||||| ||| | |||
Sbjct 11184 ATGCAAATCTTCGTCAAGACACTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 11243
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| || | ||||| || || |||||||| || || || || ||||| |||
Sbjct 11244 GACACGATCGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAA 11303
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||| ||||| || | || || || ||| | || || ||||||
Sbjct 11304 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTGTCTGACTACAAC 11363
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || |||||||||||| | |||||||| | ||| |||| |||||
Sbjct 11364 ATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 11410
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||||||||||||||| | || ||||| || || || | |||
Sbjct 10956 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCC 11015
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || ||||| ||||| || || || || ||||| |||
Sbjct 11016 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAA 11075
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | || || || || | || || || || | ||||| ||||||
Sbjct 11076 CAGCGCCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCCGACTACAAC 11135
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| ||||||||||| | || | ||| | || | || ||||| ||
Sbjct 11136 ATTCAGAAGGAGTCGACTCTTCACCTCGTTCTCCGCCTTCGTGGTGGTAT 11185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434709737024640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |