Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq33151 105 6e-18 seq669 105 6e-18 >seq33151 Length=22394 Score = 105 bits (116), Expect = 6e-18 Identities = 119/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACCC 6612 |||| ||||||| |||||||| |||| |||| ||| |||||| |||| | | Sbjct 7377 TGGTCGAGGTAGACGTGCGCATCGCCCATGACATGCGTCAGGCTCCCAGGGACCAGATCG 7436 Query 6613 CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCC 6672 || | || | || ||||||| ||| ||||| ||||| || ||||| ||||||||||| || Sbjct 7437 CATG-CACGCGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCAATATTGAACGGCACGCC 7495 Query 6673 TAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 | |||||||| | || ||||| |||||||||||| Sbjct 7496 GAGACCCATGTCACATGACCGTTGGTAGAGCTGGCAG 7532 Score = 105 bits (116), Expect = 6e-18 Identities = 119/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||||||||| ||||| || | |||||||| | || ||||||||||| ||||| || Sbjct 7532 CTGCCAGCTCTACCAACGGTCATGTGACATGGGTCTCGGCGTGCCGTTCAATATTGCGAG 7473 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGG 34754 ||||| ||||| ||| ||||||| || | || | || | | |||| |||||| ||| Sbjct 7472 CTACGCGCTGCTGACGCACATGATTGCGCGTG-CATGCGATCTGGTCCCTGGGAGCCTGA 7414 Query 34755 TGCATACGTTGGGGGATGCGCATATCTACCTGAACCA 34791 |||| |||| |||||||| ||||||| |||| Sbjct 7413 CGCATGTCATGGGCGATGCGCACGTCTACCTCGACCA 7377 >seq669 Length=171934 Score = 105 bits (116), Expect = 6e-18 Identities = 119/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACCC 6612 |||| ||||||| |||||||| |||| |||| ||| |||||| |||| | | Sbjct 135188 TGGTCGAGGTAGACGTGCGCATCGCCCATGACATGCGTCAGGCTCCCAGGGACCAGATCG 135247 Query 6613 CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCC 6672 || | || | || ||||||| ||| ||||| ||||| || ||||| ||||||||||| || Sbjct 135248 CATG-CACGCGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCAATATTGAACGGCACGCC 135306 Query 6673 TAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 | |||||||| | || ||||| |||||||||||| Sbjct 135307 GAGACCCATGTCACATGACCGTTGGTAGAGCTGGCAG 135343 Score = 105 bits (116), Expect = 6e-18 Identities = 119/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||||||||| ||||| || | |||||||| | || ||||||||||| ||||| || Sbjct 135343 CTGCCAGCTCTACCAACGGTCATGTGACATGGGTCTCGGCGTGCCGTTCAATATTGCGAG 135284 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGG 34754 ||||| ||||| ||| ||||||| || | || | || | | |||| |||||| ||| Sbjct 135283 CTACGCGCTGCTGACGCACATGATTGCGCGTG-CATGCGATCTGGTCCCTGGGAGCCTGA 135225 Query 34755 TGCATACGTTGGGGGATGCGCATATCTACCTGAACCA 34791 |||| |||| |||||||| ||||||| |||| Sbjct 135224 CGCATGTCATGGGCGATGCGCACGTCTACCTCGACCA 135188 Score = 86.0 bits (94), Expect = 6e-12 Identities = 189/276 (68%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 6853 CAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAA 6911 ||||||||| | || || |||| ||||||| |||||| | || ||||| || || | Sbjct 135541 CAGCTGGTCGACACCTTGACCCGTGTAGTCCGTCTTCGCATCAACG-TACTCGGCACCGA 135599 Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACC 6971 |||| | ||| ||||| |||||||| || || | |||||| |||| || | || | Sbjct 135600 AGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACCTCGCGGTGCGAGAGTC 135659 Query 6972 CC-CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCA--CCCCCCGGG 7028 || |||| ||| || || || || || |||| ||||||||||||| | ||| || | Sbjct 135660 CCACGCT-GTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCCGCCTCG 135718 Query 7029 ACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGC 7088 || | | ||| |||| ||| |||||||||| ||||| |||| ||| Sbjct 135719 CTCAGCGGT--ATGGACGACGTGCTGCCCTGTACGAACCACAAAAGCTCGGCGACGACGG 135776 Query 7089 CCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA 7124 | | | || || || ||||||||||| |||| Sbjct 135777 CGCGAAGGAAGACGCGCTTTGTCGTCAGCAGGGGAA 135812 Score = 86.0 bits (94), Expect = 6e-12 Identities = 189/276 (68%), Gaps = 8/276 (3%) Strand=Plus/Minus Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280 |||| ||||||||||| || || || | | | ||| |||| ||||| |||||| Sbjct 135812 TTCCCCTGCTGACGACAAAGCGCGTCTTCCTTCGCGCCGTCGTCGCCGAGCTTTTGTGGT 135753 Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGG--TGAAGATCTGGGA 34338 |||| ||| |||| ||| | | || | || ||| | ||||||||||| Sbjct 135752 TCGTACAGGGCAGCACGTCGTCCAT--ACCGCTGAGCGAGGCGGGCATCAAGATCTGGGA 135695 Query 34339 CGCTCACGGGTCTCGAGACTTTCTGGACAAGCG-GGGGTTCCCATCTCGGGAGGAGGGCG 34397 || |||| || || || || || ||| |||| ||| || | || |||| |||| Sbjct 135694 CGGCAACGGCTCGCGCGAGTTCCTCGAC-AGCGTGGGACTCTCGCACCGCGAGGTAGGCG 135636 Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457 || | || || |||||||| ||||| ||| | ||||| || || ||||| || | ||| Sbjct 135635 ACCTCGGTCCCGTCTACGGCTTCCAATGGCGGCACTTCGGTGCCGAGTA-CGTTGATGCG 135577 Query 34458 AAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTG 34492 ||| ||||||| |||| || || | ||||||||| Sbjct 135576 AAGACGGACTACACGGGTCAAGGTGTCGACCAGCTG 135541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448047334907040