Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq8335 149 1e-30
seq20113 143 6e-29
seq35245 134 3e-26
seq2224 134 3e-26
seq1514 118 3e-21
seq31326 91.5 4e-13
>seq8335
Length=118861
Score = 149 bits (164), Expect = 1e-30
Identities = 147/190 (77%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||| |||||||| || || || | ||||| |||| |||||| | |||||
Sbjct 14718 AGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCC 14659
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || || ||||||||||| |||||||| ||||||||
Sbjct 14658 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC 14599
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| || || |||||||| || | ||||| || | ||||| |||
Sbjct 14598 TGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTC 14539
Query 225682 TTGCCCGTCA 225691
||||| ||||
Sbjct 14538 TTGCCGGTCA 14529
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | || || || || || || |||| ||||| || | || || | || ||
Sbjct 14946 AGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCC 14887
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| |||||||| || || || ||||| ||||| ||||| || |||||||||
Sbjct 14886 TCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCT 14827
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||| ||||| ||||| || | ||| || || || ||||| |||
Sbjct 14826 TGGATCTTGGACTTCACATTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTC 14767
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || | || || | ||| | ||||||
Sbjct 14766 TTACCGGTGAGCGTCTTGACGAAGATTTGCAT 14735
>seq20113
Length=64481
Score = 143 bits (158), Expect = 6e-29
Identities = 156/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || ||||| ||||| || || || || | ||||| |||| || |||
Sbjct 11177 ACGAAGGCGGAGAACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 11118
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || |||||||| ||||| ||||| || || ||||||||||| ||||||||
Sbjct 11117 ACGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACC 11058
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| || ||||| ||| || ||||||||||| || | || || || |
Sbjct 11057 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAG 10998
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| |||||||| |||| ||| ||
Sbjct 10997 AGTGATGGTCTTGCCGGTCAGAGTCTT 10971
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | || || || || || || |||| ||||| || | || || | |||||
Sbjct 11395 AGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCC 11336
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| |||||||| || || || ||||||||||| || ||||| |||||||||
Sbjct 11335 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCT 11276
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||| ||||| || | ||| || || || ||||| |||
Sbjct 11275 TGGATCTTGGACTTGACGTTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTC 11216
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || | || || | ||| | ||||||
Sbjct 11215 TTACCGGTGAGTGTCTTGACGAAGATTTGCAT 11184
>seq35245
Length=420
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 3/212 (1%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||| |||||||| || || |||| ||||| |||| | ||| | |||||
Sbjct 127 AGCACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 186
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| | | || || ||||||||||| || || || ||||||||
Sbjct 187 TCAAGCTGCTTGCCAGCNA---TCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCC 243
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| || | ||||| || | ||||| |||
Sbjct 244 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTC 303
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||||| | || || | ||| | |||||
Sbjct 304 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 335
>seq2224
Length=467227
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| |||||| | ||||| || |||||||| || ||||| ||
Sbjct 112107 TTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATC 112048
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| || |||||||| || || || || |||||||| |||||||| ||| ||| |||
Sbjct 112047 AGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 111988
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|||||||| |||| ||||| || | ||||| ||||||||||||| || || | |||
Sbjct 111987 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 111929
Score = 129 bits (142), Expect = 1e-24
Identities = 128/166 (77%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| || ||| | ||||| || |||||||| || ||||| ||
Sbjct 102758 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 102699
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| || ||||||||||| || || || |||||||| |||||||| ||| ||| ||
Sbjct 102698 AGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCA 102639
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691
|||||||| |||| ||||| || | ||||| |||||||||||||
Sbjct 102638 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCA 102593
>seq1514
Length=10590
Score = 118 bits (130), Expect = 3e-21
Identities = 128/170 (75%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 225520 GATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCG 225579
|| || || |||| ||||| |||| || || | ||||| || |||||||| || |||
Sbjct 5777 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCG 5718
Query 225580 AAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACA 225639
||||| || || ||||||||||| || || || |||||||| |||||||| ||| ||
Sbjct 5717 AAGATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACG 5658
Query 225640 GCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
||||||||||| |||| || || || | ||||| |||||||| ||
Sbjct 5657 TTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 5608
>seq31326
Length=100
Score = 91.5 bits (100), Expect = 4e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594
||||| |||| | ||| | ||||| || |||||||| ||||||||||| || || |||
Sbjct 5 TTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGT 64
Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629
|||||||| || || || |||||||| ||||||||
Sbjct 65 TGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 99
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1191944749677108
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |