Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq669 105 5e-18 >seq669 Length=171934 Score = 105 bits (116), Expect = 5e-18 Identities = 232/343 (68%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 27385 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 27444 |||||||| |||| | ||||||||||| || | || ||| || ||| || || Sbjct 135473 GGGTTCCATGCGCTGAGGATGATGCGCCGATCGTACGGATTGGTCTTGAGCTTGTGGACA 135532 Query 27445 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCT 27504 | | |||||| || || || |||| |||||| | || || |||||| Sbjct 135533 ATCTCTGCCAGCTGGTCGACACCTTGACCCGTGTAGTCCGTCTTCGCATCAACGTACTCG 135592 Query 27505 GCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 27564 || ||||| |||| ||||||||| ||||| || || || ||||| || | || | |||| Sbjct 135593 GCACCGAAGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACCTCGCGGTGC 135652 Query 27565 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 27624 || ||| |||| | || || | || |||||| ||||||||||||| | ||| Sbjct 135653 GAGAGTCCCACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCC 135712 Query 27625 TTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCAC 27683 |||| ||| | |||| ||| |||| | |||||||||| ||||| | || Sbjct 135713 GCCTCGCTCAGCGGTATGGACGACGTGCTGCCCTGT-ACGAACCACAAAAGCTCGGCGAC 135771 Query 27684 GACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 27724 |||||| | || ||||| | ||| ||||| || ||||||| Sbjct 135772 GACGGC--GCGAAGGAAGACGCGCTTTGTCGTCAGCAGGGGAA 135812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369334351691042