Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq35245 109 1e-18
seq2224 93.3 1e-13
seq20113 87.8 4e-12
>seq35245
Length=420
Score = 109 bits (120), Expect = 1e-18
Identities = 152/213 (71%), Gaps = 3/213 (1%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || || || ||||| ||||| || ||||||||||| |||| | ||| | |||||
Sbjct 126 GAGCACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATC 185
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || || | | || | ||| ||||| | | ||| || ||||| ||
Sbjct 186 CTCAAGCTGCTTGCCAGCNA---TCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTC 242
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || |||||| | || | | |||| || ||| || ||||| || |||||
Sbjct 243 CTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGT 302
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||||||||| ||||| ||||||| ||||||
Sbjct 303 CTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 335
>seq2224
Length=467227
Score = 93.3 bits (102), Expect = 1e-13
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| ||||||||||| |||| ||||| | ||||| || || || |||||||| ||
Sbjct 112107 TTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATC 112048
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
|| | ||| ||||| | | ||| || ||||| || || || || |||||| | ||
Sbjct 112047 AGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 111988
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095
| | |||| || ||| || ||||| || || || |||||||| || ||||| |||||
Sbjct 111987 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 111929
>seq20113
Length=64481
Score = 87.8 bits (96), Expect = 4e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| | ||| || || ||||| || ||||||||||| || | | || | |||||
Sbjct 11396 GAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATC 11337
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || ||||| || || | ||| ||||| | | ||| || ||||| ||
Sbjct 11336 CTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTC 11277
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||| || || ||||| | || | |||| || || ||||| | || |||||
Sbjct 11276 TTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGT 11217
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||| ||||| ||||||| |||||
Sbjct 11216 CTTACCGGTGAGTGTCTTGACGAAGATTTGCAT 11184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153253386266322
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |