Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq20113 170 4e-37 seq8335 161 2e-34 seq35245 154 3e-32 seq2224 134 3e-26 seq1514 134 3e-26 seq8958 95.1 3e-14 seq31326 93.3 9e-14 seq31299 93.3 9e-14 seq4446 89.7 1e-12 seq3921 86.0 1e-11 seq9080 84.2 5e-11 >seq20113 Length=64481 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||| ||| | || || || |||||||||||||||| Sbjct 11410 CCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAC 11351 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || || || || || || |||| || |||||||| || Sbjct 11350 AGGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGG 11291 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||||||||||||| | || ||| | ||||| ||||| || | ||||||| Sbjct 11290 ATACCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGATGATTCGACT 11231 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| |||||||| || | ||||| ||||| || ||||| Sbjct 11230 TCCAATGTGATAGTCTTACCGGTGAGTGTCTTGACGAAGATTTGCAT 11184 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | || || || || ||||||||||| | Sbjct 11183 ACCACCACGAAGGCGGAGAACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGA 11124 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || |||||||| || || || || |||||||| | || |||||||| || Sbjct 11123 CAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGG 11064 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| | || ||| | ||||| ||||| |||| || || Sbjct 11063 AATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAAC 11004 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || |||| |||||| || || |||||||| Sbjct 11003 CTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 10956 >seq8335 Length=118861 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||| ||| | || || || |||||||||||||||| Sbjct 14961 CCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAC 14902 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || || || || |||| || ||||| || ||| Sbjct 14901 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGA 14842 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||||||||| | || || | ||||| ||||| || | ||||||| Sbjct 14841 ATGCCCTCCTTGTCTTGGATCTTGGACTTCACATTGTCGATCGTGTCGGATGATTCGACT 14782 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| |||||||| || | ||||| ||||| || ||||| Sbjct 14781 TCCAATGTGATAGTCTTACCGGTGAGCGTCTTGACGAAGATTTGCAT 14735 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || || ||||||||||| | Sbjct 14734 ACCACCACGGAGGCGGAGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGA 14675 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || |||||||| || || || || || ||||| | ||| |||||||| || Sbjct 14674 CAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGG 14615 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| | || ||| | || || ||||| |||| || || Sbjct 14614 AATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 14555 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || |||| ||||| || || |||||||| Sbjct 14554 CTCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 14507 >seq35245 Length=420 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 111 ACCACCACGCAGGCGGAGCACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 170 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||||||||| || || || || || | ||| || |||||||| || Sbjct 171 AAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCNA---TCAGGCGCTGTTGGTCGGGGGG 227 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| ||||| || | || || Sbjct 228 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCAC 287 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 288 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 335 >seq2224 Length=467227 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | | |||||||||||||| || || || ||||| || ||| Sbjct 112107 TTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATC 112048 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || ||||||||| || || ||||||||||| |||||||| | || || | ||| Sbjct 112047 AGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 111988 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | || || || || ||||| ||||| ||||||| ||||| ||||| Sbjct 111987 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 111929 Score = 122 bits (134), Expect = 2e-22 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||||||||| || || || ||||| || ||| Sbjct 102758 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 102699 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || |||||||| || || ||||||||||| |||||||| | || || | || Sbjct 102698 AGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCA 102639 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCT 283083 || ||||| || | || || || || ||||| ||||| ||||||| |||| Sbjct 102638 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCT 102587 >seq1514 Length=10590 Score = 134 bits (148), Expect = 3e-26 Identities = 130/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | || |||||||||||||| || || || ||||| ||| Sbjct 5774 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAG 5715 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| || |||||||| || || ||||||||||| |||||||| | || ||| | Sbjct 5714 ATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTTG 5655 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||||| |||||||| | ||||| || || ||||| ||||| || || Sbjct 5654 TCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 5608 >seq8958 Length=8154 Score = 95.1 bits (104), Expect = 3e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 230191 AGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGG 230250 |||||||| | || ||| |||| || |||| | |||||||| ||| ||||||| Sbjct 890 AGGAGTTCCTGACTGAGGCTCTTCCCTGTGGTCTGCTTGGCATGAACGCTACTCTCATGA 949 Query 230251 GGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGT 230310 ||| || || || ||||| || || || | |||| || || || | ||||| || | Sbjct 950 AGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTCGCCCTCGGCAATGAGAAGGTTT 1009 Query 230311 ATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACT 230370 | || | | ||||| || | || |||||| |||||| || || || || |||| Sbjct 1010 ACAAGGCAACCAACCCATTTGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACT 1069 Query 230371 TCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 ||||||| ||||||||| ||||| || | | | ||||| Sbjct 1070 TCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGTGT 1109 >seq31326 Length=100 Score = 93.3 bits (102), Expect = 9e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 282917 GATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACG 282976 |||||||||||| | ||| |||||||||||||| || || || || || ||||||| || Sbjct 1 GATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCG 60 Query 282977 TTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 |||||||| || || ||||||||||| |||||||| Sbjct 61 CTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 99 >seq31299 Length=100 Score = 93.3 bits (102), Expect = 9e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 282917 GATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACG 282976 |||||||||||| | ||| |||||||||||||| || || || || ||||| |||| || Sbjct 100 GATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATCAGGCG 41 Query 282977 TTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 |||||||| || || ||||||||||| |||||||| Sbjct 40 CTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 2 >seq4446 Length=444291 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 230227 TCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCG 230286 |||||||||| ||| ||||||| ||| || || || ||||| || || || | ||| Sbjct 73334 TCGGCATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCG 73275 Query 230287 TGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCA 230346 | || || || | ||||| || || || | | ||||| || | || |||||| || Sbjct 73274 TCGCCCTCGGCAATGAGAAGGTTTACAAGGCAACCAACCCATTTGACTTCATGGAGAACA 73215 Query 230347 TTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCG 230406 |||| || || || || ||||||||||| ||||||||| ||||| || | | | | Sbjct 73214 TTTCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTG 73155 Query 230407 GTGT 230410 |||| Sbjct 73154 GTGT 73151 >seq3921 Length=218 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 230229 GGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTG 230288 |||||||| ||| ||||||| ||| || || || ||||| || || || | |||| Sbjct 218 GGCATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTC 159 Query 230289 GCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATT 230348 || || || | ||||| || || || | | ||||| || | || |||||| |||| Sbjct 158 GCCCTCGGCAATGAGAAGGTTTACAAGGCAACCAACCCATTTGACTTCATGGAGAACATT 99 Query 230349 TCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGT 230408 || || || || || ||||||||||| ||||||||| ||||| || | | | ||| Sbjct 98 TCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGT 39 Query 230409 GT 230410 || Sbjct 38 GT 37 >seq9080 Length=8040 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/146 (75%), Gaps = 5/146 (3%) Strand=Plus/Plus Query 109939 GCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATACCAAGGTTGATTGTGAAA 109998 || ||| | |||||||||||||| | |||||||| | | | |||| | | ||||||| Sbjct 2488 GCGACACCCTCAAATTGCGGGAAACTCCTAAAGCTCACGCT-CCAAAGCCGTCTGTGAAA 2546 Query 109999 GCA-TCAGCTGGCCGAG--AACAGAACTCGGGTATGGTAAAAATTCATATGATGCCACAA 110055 ||| | | ||||| | || | ||||||||| | || || | | ||||| |||| Sbjct 2547 GCAGTTCGGTGGCCAGGTTAATTGC-CTCGGGTATTGGAACAACGCGTGAGATGCAACAA 2605 Query 110056 TGGGCAATCCGCAGCCAAGCCTCTAA 110081 ||| |||||||||||||||||||||| Sbjct 2606 TGGACAATCCGCAGCCAAGCCTCTAA 2631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046224445717828